FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7550, 267 aa
  1>>>pF1KB7550 267 - 267 aa - 267 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2534+/-0.000894; mu= 8.1518+/- 0.053
 mean_var=244.5045+/-52.116, 0's: 0 Z-trim(114.4): 783  B-trim: 801 in 1/52
 Lambda= 0.082022
 statistics sampled from 14042 (15005) to 14042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.461), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS8112.1 OVOL1 gene_id:5017|Hs108|chr11          ( 267) 1897 236.8 1.2e-62
CCDS13132.1 OVOL2 gene_id:58495|Hs108|chr20        ( 275)  918 121.0 9.3e-28
CCDS82333.1 OVOL3 gene_id:728361|Hs108|chr19       ( 190)  578 80.5 9.6e-16


>>CCDS8112.1 OVOL1 gene_id:5017|Hs108|chr11               (267 aa)
 initn: 1897 init1: 1897 opt: 1897  Z-score: 1238.1  bits: 236.8 E(32554): 1.2e-62
Smith-Waterman score: 1897; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB7 MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLGFCPPQPYREPEPSVAEPPSCPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLGFCPPQPYREPEPSVAEPPSCPLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LNMSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDLFTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LNMSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDLFTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHPDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHPDSP
              190       200       210       220       230       240

              250       260       
pF1KB7 LLRKTSKKVAVALQNTVTSLLQGSPHL
       :::::::::::::::::::::::::::
CCDS81 LLRKTSKKVAVALQNTVTSLLQGSPHL
              250       260       

>>CCDS13132.1 OVOL2 gene_id:58495|Hs108|chr20             (275 aa)
 initn: 918 init1: 753 opt: 918  Z-score: 611.9  bits: 121.0 E(32554): 9.3e-28
Smith-Waterman score: 918; 52.4% identity (71.6% similar) in 271 aa overlap (1-267:1-268)

               10        20        30           40        50       
pF1KB7 MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLGFC---PPQPYREPEPSVAEPPSC
       ::..::::.  ...  :.:.:::::.:.. :.::.::     ::.  :    : .   : 
CCDS13 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB7 PLALNMSLRDSSYSMAPGPCVVAQLPSEDM-GHLTDPQSRDHGFLRTKMKVTLGDSPSGD
         .   . ..::   ::   .     .:   :::.  :   .   :.:.: : :   .. 
CCDS13 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSV
               70        80        90          100       110       

        120       130       140       150       160       170      
pF1KB7 LFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKC
       . .: .: :.:  :::::::.::::.:::::::.::::::::::::::::::::.:::::
CCDS13 VHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKC
       120       130       140       150       160       170       

        180       190       200       210       220       230      
pF1KB7 SLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHH
       ..:.:::::::::::::::::::::.::::.:: ::::::.:: :. .::   ::..  :
CCDS13 NVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAH
       180       190       200       210       220       230       

        240       250       260              
pF1KB7 PDSPLLRKTSKKVAVALQNTVTSLLQGSPHL       
       : : .:.:::::.:. ::. .::  : .  :       
CCDS13 PGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
       240       250       260       270     

>>CCDS82333.1 OVOL3 gene_id:728361|Hs108|chr19            (190 aa)
 initn: 786 init1: 565 opt: 578  Z-score: 396.1  bits: 80.5 E(32554): 9.6e-16
Smith-Waterman score: 611; 46.0% identity (61.6% similar) in 237 aa overlap (1-235:1-187)

                 10        20        30        40        50        
pF1KB7 MPRAFLVK--KPCVSTCKRNWSELPDEERGEIYVPVSLGFCPPQPYREPEPSVAEPPSCP
       :::::::.  .:       ::..:::. ::. :.:     :          :.. ::.  
CCDS82 MPRAFLVRSRRP----QPPNWGHLPDQLRGDAYIPD----CS---------SLGGPPA--
               10            20        30                     40   

       60        70        80        90       100       110        
pF1KB7 LALNMSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDLF
          . :.::      :    .:: :..  :.::.   :  :        :::        
CCDS82 -QQSSSVRD------PW---TAQ-PTQ--GNLTSAP-RGPG--------TLG--------
                     50              60                 70         

      120       130       140       150       160       170        
pF1KB7 TCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSL
        : .: :::  ::::.::.:::. :.::::  :::::.:.::::::.:::::.::..:: 
CCDS82 -CPLCPKAFPLQRMLTRHLKCHSPVRRHLCRCCGKGFHDAFDLKRHMRTHTGIRPFRCSA
               80        90       100       110       120       130

      180       190       200       210       220       230        
pF1KB7 CDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHPD
       : ::::::::::.:: :.::   .:::.::: ::.:::.:: ::   . .. :   :   
CCDS82 CGKAFTQRCSLEAHLAKVHGQPASYAYRERREKLHVCEDCGFTSSRPDTYAQHRALHRAA
              140       150       160       170       180       190

      240       250       260       
pF1KB7 SPLLRKTSKKVAVALQNTVTSLLQGSPHL




267 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:38:27 2016 done: Fri Nov  4 08:38:27 2016
 Total Scan time:  2.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]