FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7551, 197 aa
  1>>>pF1KB7551 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2613+/-0.000871; mu= 9.0945+/- 0.052
 mean_var=86.2036+/-16.856, 0's: 0 Z-trim(107.4): 16  B-trim: 4 in 1/52
 Lambda= 0.138137
 statistics sampled from 9560 (9566) to 9560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS14765.1 VBP1 gene_id:7411|Hs108|chrX           ( 197) 1282 264.9 2.2e-71
CCDS78525.1 VBP1 gene_id:7411|Hs108|chrX           ( 192) 1075 223.7 5.7e-59


>>CCDS14765.1 VBP1 gene_id:7411|Hs108|chrX                (197 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1394.9  bits: 264.9 E(32554): 2.2e-71
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB7 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
              130       140       150       160       170       180

              190       
pF1KB7 NWDVKRRNKDDSTKNKA
       :::::::::::::::::
CCDS14 NWDVKRRNKDDSTKNKA
              190       

>>CCDS78525.1 VBP1 gene_id:7411|Hs108|chrX                (192 aa)
 initn: 1074 init1: 1074 opt: 1075  Z-score: 1172.1  bits: 223.7 E(32554): 5.7e-59
Smith-Waterman score: 1075; 97.1% identity (97.1% similar) in 172 aa overlap (26-197:21-192)

               10        20        30        40        50        60
pF1KB7 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
                                :     :::::::::::::::::::::::::::::
CCDS78      MAPQPMIHTQQGLRTSSPSTPSPEHQEDVDSFMKQPGNETADTVLKKLDEQYQKY
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB7 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB7 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
         120       130       140       150       160       170     

              190       
pF1KB7 NWDVKRRNKDDSTKNKA
       :::::::::::::::::
CCDS78 NWDVKRRNKDDSTKNKA
         180       190  




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:39:02 2016 done: Fri Nov  4 08:39:02 2016
 Total Scan time:  1.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]