FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7551, 197 aa
  1>>>pF1KB7551 197 - 197 aa - 197 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8149+/-0.000357; mu= 12.0147+/- 0.022
 mean_var=92.9354+/-18.100, 0's: 0 Z-trim(114.8): 15  B-trim: 35 in 1/52
 Lambda= 0.133040
 statistics sampled from 24871 (24881) to 24871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.292), width:  16
 Scan time:  5.910

The best scores are:                                      opt bits E(85289)
NP_003363 (OMIM: 300133) prefoldin subunit 3 isofo ( 197) 1282 255.7 3.5e-68
NP_001290472 (OMIM: 300133) prefoldin subunit 3 is ( 233) 1282 255.8   4e-68
NP_001290473 (OMIM: 300133) prefoldin subunit 3 is ( 192) 1075 216.0 3.1e-56
NP_001290474 (OMIM: 300133) prefoldin subunit 3 is ( 160) 1034 208.0 6.3e-54


>>NP_003363 (OMIM: 300133) prefoldin subunit 3 isoform 1  (197 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1345.1  bits: 255.7 E(85289): 3.5e-68
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB7 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
              130       140       150       160       170       180

              190       
pF1KB7 NWDVKRRNKDDSTKNKA
       :::::::::::::::::
NP_003 NWDVKRRNKDDSTKNKA
              190       

>>NP_001290472 (OMIM: 300133) prefoldin subunit 3 isofor  (233 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1344.1  bits: 255.8 E(85289): 4e-68
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:37-233)

                                             10        20        30
pF1KB7                               MAAVKDSCGKGEMATGNGRRLHLGIPEAVF
                                     ::::::::::::::::::::::::::::::
NP_001 GEAGLQVRTSQSRNPGGRRPGRQSRARIPKMAAVKDSCGKGEMATGNGRRLHLGIPEAVF
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 VEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKY
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 MQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLST
        130       140       150       160       170       180      

              160       170       180       190       
pF1KB7 ATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRRNKDDSTKNKA
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRRNKDDSTKNKA
        190       200       210       220       230   

>>NP_001290473 (OMIM: 300133) prefoldin subunit 3 isofor  (192 aa)
 initn: 1074 init1: 1074 opt: 1075  Z-score: 1130.5  bits: 216.0 E(85289): 3.1e-56
Smith-Waterman score: 1075; 97.1% identity (97.1% similar) in 172 aa overlap (26-197:21-192)

               10        20        30        40        50        60
pF1KB7 MAAVKDSCGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKY
                                :     :::::::::::::::::::::::::::::
NP_001      MAPQPMIHTQQGLRTSSPSTPSPEHQEDVDSFMKQPGNETADTVLKKLDEQYQKY
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB7 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPT
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB7 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVY
         120       130       140       150       160       170     

              190       
pF1KB7 NWDVKRRNKDDSTKNKA
       :::::::::::::::::
NP_001 NWDVKRRNKDDSTKNKA
         180       190  

>>NP_001290474 (OMIM: 300133) prefoldin subunit 3 isofor  (160 aa)
 initn: 1034 init1: 1034 opt: 1034  Z-score: 1089.1  bits: 208.0 E(85289): 6.3e-54
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 160 aa overlap (38-197:1-160)

        10        20        30        40        50        60       
pF1KB7 CGKGEMATGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNL
                                     ::::::::::::::::::::::::::::::
NP_001                               MKQPGNETADTVLKKLDEQYQKYKFMELNL
                                             10        20        30

        70        80        90       100       110       120       
pF1KB7 AQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWL
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KB7 GANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR
              100       110       120       130       140       150

       190       
pF1KB7 NKDDSTKNKA
       ::::::::::
NP_001 NKDDSTKNKA
              160




197 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:39:03 2016 done: Fri Nov  4 08:39:04 2016
 Total Scan time:  5.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]