FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7554, 270 aa
  1>>>pF1KB7554 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2811+/-0.000793; mu= 4.1036+/- 0.048
 mean_var=228.4342+/-46.993, 0's: 0 Z-trim(116.7): 140  B-trim: 922 in 1/51
 Lambda= 0.084858
 statistics sampled from 17195 (17360) to 17195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.533), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS7423.1 HHEX gene_id:3087|Hs108|chr10           ( 270) 1870 240.6 8.6e-64


>>CCDS7423.1 HHEX gene_id:3087|Hs108|chr10                (270 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 1258.8  bits: 240.6 E(32554): 8.6e-64
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB7 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSP
              190       200       210       220       230       240

              250       260       270
pF1KB7 ASQEDLESEISEDSDQEVDIEGDKSYFNAG
       ::::::::::::::::::::::::::::::
CCDS74 ASQEDLESEISEDSDQEVDIEGDKSYFNAG
              250       260       270




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:27:12 2016 done: Sat Nov  5 18:27:13 2016
 Total Scan time:  2.930 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]