Result of FASTA (omim) for
pF1KB7554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7554, 270 aa
1>>>pF1KB7554 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0692+/-0.00032; mu= 5.7305+/- 0.020
mean_var=253.4285+/-51.818, 0's: 0 Z-trim(124.1): 174 B-trim: 2320 in 1/57
Lambda= 0.080565
statistics sampled from 44944 (45176) to 44944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.53), width: 16
Scan time: 8.760
The best scores are: opt bits E(85289)
NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 1870 229.3 5.7e-60
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 322 49.4 8.6e-06
NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488) 326 50.2 8.8e-06
NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290) 296 46.4 7.1e-05
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 285 45.2 0.00017
NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 276 44.2 0.00041
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 259 42.0 0.0012
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 258 42.1 0.0017
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 257 41.9 0.0017
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 251 40.9 0.0018
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 254 41.5 0.002
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 255 41.8 0.0022
XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 249 40.9 0.0029
NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 248 40.8 0.0031
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 246 40.4 0.0031
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 246 40.4 0.0032
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 246 40.5 0.0036
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 245 40.5 0.0041
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 245 40.5 0.0041
XP_011530999 (OMIM: 600034) PREDICTED: homeobox pr ( 119) 238 39.2 0.0042
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 246 40.7 0.0043
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 244 40.3 0.0044
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 244 40.3 0.0044
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 243 40.2 0.0048
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 244 40.4 0.0049
NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 243 40.2 0.0049
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 242 40.1 0.005
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 243 40.3 0.0054
XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 241 40.0 0.0056
XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 241 40.0 0.0058
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 240 40.0 0.0072
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 235 39.2 0.0083
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 235 39.3 0.0094
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 236 39.5 0.0095
>>NP_002720 (OMIM: 604420) hematopoietically-expressed h (270 aa)
initn: 1870 init1: 1870 opt: 1870 Z-score: 1197.6 bits: 229.3 E(85289): 5.7e-60
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KB7 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSP
190 200 210 220 230 240
250 260 270
pF1KB7 ASQEDLESEISEDSDQEVDIEGDKSYFNAG
::::::::::::::::::::::::::::::
NP_002 ASQEDLESEISEDSDQEVDIEGDKSYFNAG
250 260 270
>>NP_057254 (OMIM: 604240) T-cell leukemia homeobox prot (284 aa)
initn: 301 init1: 238 opt: 322 Z-score: 225.0 bits: 49.4 E(85289): 8.6e-06
Smith-Waterman score: 322; 36.3% identity (62.6% similar) in 171 aa overlap (41-204:56-224)
20 30 40 50 60
pF1KB7 GAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTL-PSPNSSFTSLVSPYRTPV
: .. :: .: : :.:: .. . :.:.
NP_057 SGPETPGGGLGLGRGGQGHGENGAFSGGYHGASGYGPAGSLAPLPGSSGVGPGGVIRVPA
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB7 YEPTPIHPAFSHHSAAALAAAYG-PGGFGGPLYPFP----RTVNDYTHALLRHDPL-GKP
..: :. : . :. .. : ::..: .:. : ..: : : .:. :
NP_057 HRPLPVPPPAGGAPAVPGPSGLGGAGGLAGLTFPWMDSGRRFAKDRLTAAL--SPFSGTR
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB7 LLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT
. :. .: ::: .. :: .:..:::..: ::::. :: ::: :.... ::::
NP_057 RIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB7 WFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPASQ
::::::.:::: :. ....
NP_057 WFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQ
210 220 230 240 250 260
>>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H (488 aa)
initn: 296 init1: 252 opt: 326 Z-score: 224.8 bits: 50.2 E(85289): 8.8e-06
Smith-Waterman score: 326; 32.0% identity (53.7% similar) in 281 aa overlap (2-260:136-406)
10 20
pF1KB7 MQYPHPGPAAGAVGVPL----YAPTPLLQPA
: : : : :::. : .:.: . .
NP_068 AGFPQRLSPLSAAYHHHHPQQQQQQQQPQQQQPPPPPRAGALQPPASGTRVVPNPHHSGS
110 120 130 140 150 160
30 40 50 60 70 80
pF1KB7 HPTP------FYIEDILGRGPAAPTPAPTLPSPNSSFTSLVSPYRTPVYEPTPIHPAFSH
:.: : :. ::. : : . ..:::.. : :. .: . .
NP_068 APAPSSKDLKFGIDRILS---AEFDPKVKEGNTLRDLTSLLTGGR-----PAGVHLSGLQ
170 180 190 200 210
90 100 110 120 130
pF1KB7 HSAAALAAAYGP----GGFGGPLYPFPRTVNDYTHALLRHDPLGKPLLWSPFL-QRPLHK
::. . :. : ... .:: :: :. : . : .: . . : .:
NP_068 PSAGQFFASLDPINEASAILSPLNSNPR--NSVQHQFQDTFPGPYAVLTKDTMPQTYKRK
220 230 240 250 260 270
140 150 160 170 180 190
pF1KB7 RKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLK
:. ... ::: : :::.:: :::.. :.::.:: :: :.. :::.:::::: :::. :
NP_068 RSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSK
280 290 300 310 320 330
200 210 220 230 240
pF1KB7 QENPQSNKKEELESLDS----SCDQRQDL--PSEQNKGASLDSSQCSPSPASQEDLE-SE
. . :..: .: : . : .:: ::... : .::. . : : .:
NP_068 EAQAQKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDSESLDMAPSDTERTE
340 350 360 370 380 390
250 260 270
pF1KB7 ISEDSDQEVDIEGDKSYFNAG
:: : ... .
NP_068 GSERSLHQTTVIKAPVTGALITASSAGSGGSSGGGGNSFSFSSASSLSSSSTSAGCASSL
400 410 420 430 440 450
>>NP_004088 (OMIM: 600034) homeobox protein EMX1 [Homo s (290 aa)
initn: 259 init1: 190 opt: 296 Z-score: 208.6 bits: 46.4 E(85289): 7.1e-05
Smith-Waterman score: 299; 31.5% identity (56.8% similar) in 241 aa overlap (7-232:58-285)
10 20 30
pF1KB7 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIED
: ..:..: : : . .: .:: .
NP_004 APAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLAAAASEEPLRPTALNYPH
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 ILGRGPAAPTPAPTLPSPNSSFTSL-VSPYRTP--VYEPTPIHPAFSHHSAAALAAA--Y
:.: : . : .. .. : : : :. . :::.. : : :.:.
NP_004 -----PSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAMNHPALTVHPAHQLGASPLQ
90 100 110 120 130 140
100 110 120 130 140
pF1KB7 GPGGFGG-----PLYPFPRTVND--YTHALLRHD-PLGKPLLWSPFLQRPLHKRKGGQVR
: .: : ::. .: .. . . : . : : :: .:: ..: . : .
NP_004 PPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPKRIRTA----
150 160 170 180 190
150 160 170 180 190 200
pF1KB7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR--LKQENPQ
:: .: ..::. :: ..:. :::.:: :.::: :::.::::::.:..: :..:.:.
NP_004 FSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPE
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB7 SNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPASQEDLESEISEDSDQEVDIE
:..:.. : .: . ..: .: ..:
NP_004 SEQKKK----GSHHINRWRIATKQANGEDIDVTSND
260 270 280 290
270
pF1KB7 GDKSYFNAG
>>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa)
initn: 356 init1: 239 opt: 285 Z-score: 201.6 bits: 45.2 E(85289): 0.00017
Smith-Waterman score: 316; 32.0% identity (53.2% similar) in 231 aa overlap (2-206:8-235)
10 20 30 40 50
pF1KB7 MQYPHPG-PAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPS
: ::: : . .. : .: :: : . :: :: . :. : ::
NP_066 MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPA-PRGPDGASYLG-GPPGGRPGATYPS
10 20 30 40 50
60 70 80 90
pF1KB7 PNSSFTSLVSPY------------------RTPVYEPTP--IHPAFSHHSAAALAAAYGP
.::..: .:. :.:...: : . : . . :. ..
NP_066 LPASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPS-ALPAMPSVPTV
60 70 80 90 100 110
100 110 120 130 140
pF1KB7 GGFGGPLYPFP----RTVNDYTHALLRHDPLGKPL-LWSPFLQRPLHKRKGGQVRFSNDQ
...:: .:. : :.: : :. . :. .: ::: .. :: :
NP_066 SSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQ
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB7 TIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKEEL
::::.:. ::::. :: ::: :.... ::::::::::.:::: :. ......
NP_066 ICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQAS
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 ESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPASQEDLESEISEDSDQEVDIEGDKSYFN
NP_066 RLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV
240 250 260 270 280 290
>>NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 [Hom (367 aa)
initn: 280 init1: 231 opt: 276 Z-score: 194.8 bits: 44.2 E(85289): 0.00041
Smith-Waterman score: 297; 32.0% identity (51.2% similar) in 297 aa overlap (5-257:68-337)
10 20 30
pF1KB7 MQYPHPG----PAAGAVGVPLYAPTPLLQPAHPT
.:: ::.:... : .: :. : :
NP_006 AAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLS-SLGSPPQQLSAA--T
40 50 60 70 80 90
40 50 60 70 80
pF1KB7 PFYIEDILGRGPAAPTPA-PTLPSPNSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAA
: :.:::.: :. :. . .::: . : .: : . . . : .::: ::
NP_006 PHGINDILSR-PSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAA----AAAAAAA
100 110 120 130 140
90 100 110 120 130
pF1KB7 AYGPGGF--GGP----LYPFPRTVNDY-------THALLRHD-PLGK-----PLLWSPFL
: .:.:. : : : : : . : . :. :. ::.. :..: .
NP_006 ASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVM
150 160 170 180 190 200
140 150 160 170
pF1KB7 QRPL----------H----------KRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRL
: : : ::: . ::..: . ::: :: :::. ::: ::
NP_006 QSPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARL
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB7 AKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGAS
: : ..: :::.::::::.:::. . . . :: .:: .:. ::::
NP_006 AYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKK------------KQDSETERLKGAS
270 280 290 300 310
240 250 260 270
pF1KB7 LDSSQCSPSPASQEDLESEISEDSDQEVDIEGDKSYFNAG
. . ..: .. .. .::.:
NP_006 ENEEE-------DDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHASEPESSS
320 330 340 350 360
>>NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 isof (234 aa)
initn: 266 init1: 220 opt: 259 Z-score: 186.4 bits: 42.0 E(85289): 0.0012
Smith-Waterman score: 292; 35.4% identity (53.1% similar) in 254 aa overlap (4-241:7-232)
10 20 30 40 50
pF1KB7 MQYPHPGPAAGAVGVPLYAPTPLLQPAHP-TPFYIEDILGRGPAAPTPAPTLPSPNS
:.:: : . ..: :: :..: : : :.::: : : . .:
NP_006 MLRVPEPRPGEAKAEGAAP---PT----PSKPLTSFLIQDILRDG------AQRQGGRTS
10 20 30 40
60 70 80 90 100 110
pF1KB7 SFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLR
: . : : :: : .: .. :.: . : ::.. . ...: .
NP_006 S-----QRQRDPEPEPEP-EPEGGRSRAGAQNDQLSTG---------PRAAPEEAETLAE
50 60 70 80 90
120 130 140 150 160
pF1KB7 HDP---LGKPLLWS-------PFL-QRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPP
.: ::. :: : : : : : . .: ... ::. :.::::.:: ::::: :
NP_006 TEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAP
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB7 ERKRLAKMLQLSERQVKTWFQNRRAKWRR--LKQENPQSNKKEELESLDSSCDQRQDLPS
:: .::: :.:.: ::: :::::: : .: :..: . .:. : .: .: .: :
NP_006 ERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVS
160 170 180 190 200 210
230 240 250 260 270
pF1KB7 EQNKGASLDSSQC--SPSPASQEDLESEISEDSDQEVDIEGDKSYFNAG
:. : : :::
NP_006 VYNSYPYYPYLYCVGSWSPAFW
220 230
>>XP_011538046 (OMIM: 186770) PREDICTED: T-cell leukemia (342 aa)
initn: 265 init1: 213 opt: 258 Z-score: 183.8 bits: 42.1 E(85289): 0.0017
Smith-Waterman score: 263; 28.4% identity (55.1% similar) in 236 aa overlap (6-224:82-306)
10 20 30
pF1KB7 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIE
:: ::. :. ..: . ..
XP_011 GGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLT-------GSYNVN
60 70 80 90 100
40 50 60 70 80
pF1KB7 DILGRGPAAPTPAPTLPSPNSSFTSLVSPYRTPVYEPTP---IHP---AFSHHSAAALAA
:. ::. . . : ... : .. :.:...: :: : . .. .. :
XP_011 MALAGGPGPGGGGGS--SGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPA
110 120 130 140 150 160
90 100 110 120 130 140
pF1KB7 AYGPGGFGGPLYPFPRTVNDYTHALLRHDPLGKPLLWS-----PFLQRPLHKRKGGQVRF
: ... : .:. .. ::. : .:. . :. .: :.: .. :
XP_011 MPGVNNLTGLTFPWMESNRRYTKD--RFTVALSPFTVTRRIGHPYQNRTPPKKKKPRTSF
170 180 190 200 210 220
150 160 170 180 190 200
pF1KB7 SNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNK
. : ::::.:. ::::. :: ::: :.... ::::::::::.:::: :. ....
XP_011 TRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAER
230 240 250 260 270 280
210 220 230 240 250
pF1KB7 KEE---LESLDSSCDQR---QDLPSEQNKGASLDSSQCSPSPASQEDLESEISEDSDQEV
.. : .:.. :. : ::..
XP_011 QQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASA
290 300 310 320 330 340
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 247 init1: 171 opt: 257 Z-score: 183.6 bits: 41.9 E(85289): 0.0017
Smith-Waterman score: 272; 27.8% identity (52.0% similar) in 273 aa overlap (2-250:59-320)
10 20
pF1KB7 MQYPHPG----PAAGAVGV-----PLYAPTP
: :: : :.:. . : : :.
NP_002 SGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAY-PAA
30 40 50 60 70 80
30 40 50 60 70
pF1KB7 LLQPAHPTPFYIEDILGRGPAAP--TPAPTLP-----SPNSSF--TSLVSPYRTPVYEPT
: ::: . :: :.: : : : .: .. . ...: : .:
NP_002 ALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPR
90 100 110 120 130 140
80 90 100 110 120 130
pF1KB7 PIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLR-HDPLGKPLLWSPFLQR
. :: .. :: :. :.: ..: :. . : . :. ..:. : . . ..
NP_002 AVPPAAPRRCEAAPATPGVPAGGSAPACPL--LLADKSPLGLKGKEPVVYPWMKKIHVSA
150 160 170 180 190 200
140 150 160 170 180
pF1KB7 PLHKRKGGQVR-----FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN
. .::. . .. .:..::::.:. ..::. .: ..:. : ::::::: ::::
NP_002 VNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQN
210 220 230 240 250 260
190 200 210 220 230 240
pF1KB7 RRAKWRRLKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPASQEDLE
:: :: :... : : ..: .:. . . :... : : :... .
NP_002 RRMKW---KKDHKLPNTK--MRSSNSASASAGPPGKAQTQSPHLHPH---PHPSTSTPVP
270 280 290 300 310
250 260 270
pF1KB7 SEISEDSDQEVDIEGDKSYFNAG
: :
NP_002 SSI
320
>>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i (159 aa)
initn: 236 init1: 220 opt: 251 Z-score: 183.3 bits: 40.9 E(85289): 0.0018
Smith-Waterman score: 252; 41.9% identity (56.8% similar) in 155 aa overlap (102-241:5-157)
80 90 100 110 120
pF1KB7 PTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALL---RHDPLGKPLLWS-
: :: . : : :: ::. :: :
NP_001 MLRVPEPRPGEAETLAETEPERH--LGSYLLDSE
10 20 30
130 140 150 160 170 180
pF1KB7 ------PFL-QRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ
: : : : . .: ... ::. :.::::.:: ::::: ::: .::: :.:.: :
NP_001 NTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ
40 50 60 70 80 90
190 200 210 220 230
pF1KB7 VKTWFQNRRAKWRR--LKQENPQSNKKEELESLDSSCDQRQDLPSEQNKGASLDSSQC--
:: :::::: : .: :..: . .:. : .: .: .: : :. :
NP_001 VKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVG
100 110 120 130 140 150
240 250 260 270
pF1KB7 SPSPASQEDLESEISEDSDQEVDIEGDKSYFNAG
: :::
NP_001 SWSPAFW
270 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:27:13 2016 done: Sat Nov 5 18:27:15 2016
Total Scan time: 8.760 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]