Result of FASTA (ccds) for
pF1KB7556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7556, 271 aa
1>>>pF1KB7556 271 - 271 aa - 271 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4817+/-0.000751; mu= 4.9743+/- 0.046
mean_var=235.9003+/-47.443, 0's: 0 Z-trim(118.9): 30 B-trim: 468 in 1/52
Lambda= 0.083505
statistics sampled from 19937 (19969) to 19937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.613), width: 16
Scan time: 2.810
The best scores are: opt bits E(32554)
CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11 ( 271) 1878 237.6 7e-63
CCDS76436.1 FOSL1 gene_id:8061|Hs108|chr11 ( 169) 920 122.0 2.8e-28
CCDS73324.1 FOSL1 gene_id:8061|Hs108|chr11 ( 235) 915 121.6 5.3e-28
CCDS76437.1 FOSL1 gene_id:8061|Hs108|chr11 ( 135) 735 99.6 1.2e-21
CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2 ( 326) 487 70.1 2.2e-12
CCDS9841.1 FOS gene_id:2353|Hs108|chr14 ( 380) 468 67.9 1.2e-11
>>CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11 (271 aa)
initn: 1878 init1: 1878 opt: 1878 Z-score: 1242.4 bits: 237.6 E(32554): 7e-63
Smith-Waterman score: 1878; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)
10 20 30 40 50 60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
190 200 210 220 230 240
250 260 270
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
:::::::::::::::::::::::::::::::
CCDS81 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
250 260 270
>>CCDS76436.1 FOSL1 gene_id:8061|Hs108|chr11 (169 aa)
initn: 920 init1: 920 opt: 920 Z-score: 621.2 bits: 122.0 E(32554): 2.8e-28
Smith-Waterman score: 941; 62.4% identity (62.4% similar) in 271 aa overlap (1-271:1-169)
10 20 30 40 50 60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
:::::::::::::::::::::::::::::::::
CCDS76 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQ---------------------------
10 20 30
70 80 90 100 110 120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
CCDS76 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ---------------ETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
40 50 60 70
190 200 210 220 230 240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
80 90 100 110 120 130
250 260 270
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
:::::::::::::::::::::::::::::::
CCDS76 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
140 150 160
>>CCDS73324.1 FOSL1 gene_id:8061|Hs108|chr11 (235 aa)
initn: 915 init1: 915 opt: 915 Z-score: 616.2 bits: 121.6 E(32554): 5.3e-28
Smith-Waterman score: 1564; 86.7% identity (86.7% similar) in 271 aa overlap (1-271:1-235)
10 20 30 40 50 60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
:::::::::::::::::::::::::::::::::::::::
CCDS73 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQ---------------------
70 80 90
130 140 150 160 170 180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ---------------ETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
150 160 170 180 190 200
250 260 270
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
:::::::::::::::::::::::::::::::
CCDS73 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
210 220 230
>>CCDS76437.1 FOSL1 gene_id:8061|Hs108|chr11 (135 aa)
initn: 732 init1: 732 opt: 735 Z-score: 502.0 bits: 99.6 E(32554): 1.2e-21
Smith-Waterman score: 735; 77.9% identity (83.6% similar) in 140 aa overlap (1-138:1-135)
10 20 30 40 50 60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
::::::::::::::::::::::::::::::::::::::: . . ..: :. :
CCDS76 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQPGGRGAPPSKARAEQ-----A
70 80 90 100 110
130 140 150 160 170
pF1KB7 KCRNRRK--ELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGA
: . .. : :: : : :
CCDS76 GCGQVQEPEEGTDRLPAGGD
120 130
>>CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2 (326 aa)
initn: 546 init1: 413 opt: 487 Z-score: 335.7 bits: 70.1 E(32554): 2.2e-12
Smith-Waterman score: 746; 46.0% identity (65.2% similar) in 328 aa overlap (1-267:1-322)
10 20 30 40
pF1KB7 MFRDFGEPGP-SSGNGGGYGGPAQPPAAAQAA--QQKFHL---------VPSINTMSGSQ
:..:. :: .... :. :.::. . .... ::::.. .:.::... ::
CCDS17 MYQDY--PGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQ
10 20 30 40 50
50 60 70 80 90
pF1KB7 ELQWMVQPHFLGPSSYPRPLTYPQYSP-PQ----------PRPGVIRALGPPPGVRRRPC
.::::::: . : : : ..: ::: : ::::::...: : :::
CCDS17 DLQWMVQPTVITSMSNPYPRSHP-YSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRD-
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB7 EQISPEEEERRRVRRERNKLAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQ
::.::::::.::.::::::::::::::::.:::. :::::..::.::::::.:: ::::.
CCDS17 EQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKE
120 130 140 150 160 170
160 170 180
pF1KB7 KERLELVLEAHRPICKI-PE----------------GAKEG-----------DTGSTSGT
::.::..: :: :.::: :: :.. : :. :.:..
CCDS17 KEKLEFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSA
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB7 SSPPAPCRPVPCISLSPGPVLEPEALHTPTLMT-TPSLTPFTPSLVFTYPS-----TP--
. : . ::.. : : : :::: ..: ::..:: : .::::::: .:
CCDS17 GLDKAQRSVIKPISIAGGFYGE-EPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPAS
240 250 260 270 280 290
250 260 270
pF1KB7 --EPCASAHRKSSSSSGDPSSDPLGSPTLLAL
: :..:::.:::: :: ::: :.:::
CCDS17 PSESCSKAHRRSSSS-GDQSSDSLNSPTLLAL
300 310 320
>>CCDS9841.1 FOS gene_id:2353|Hs108|chr14 (380 aa)
initn: 677 init1: 422 opt: 468 Z-score: 322.5 bits: 67.9 E(32554): 1.2e-11
Smith-Waterman score: 536; 42.2% identity (65.8% similar) in 237 aa overlap (36-251:59-288)
10 20 30 40 50 60
pF1KB7 GEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG---PS
...:.....: : .:::.::: ... ::
CCDS98 YYHSPADSFSSMGSPVNAQDFCTDLAVSSANFIPTVTAISTSPDLQWLVQPALVSSVAPS
30 40 50 60 70 80
70 80 90 100 110
pF1KB7 SY--PRPLTYPQYSP-PQPRPGVIRAL--GPPPGVRRR-PCEQISPEEEERRRVRRERNK
. :.:. : : : ::.... : .. :: ::.::::::.::.::::::
CCDS98 QTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNK
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB7 LAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPE
.:::::::::.:::: ::::::.::::::.:: :: .: :.::.::..: :::: ::::.
CCDS98 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPD
150 160 170 180 190 200
180 190 200 210 220
pF1KB7 G---AKEGDTGSTSGTSSPPAPCRP-------VPCISLS-PGPVLEP-EALHTPTLMTTP
.: ...: . :.. : : .: .. : : .:: ... . : : :
CCDS98 DLGFPEEMSVASLDLTGGLPEVATPESEEAFTLPLLNDPEPKPSVEPVKSISSMELKTEP
210 220 230 240 250 260
230 240 250 260 270
pF1KB7 SLTPFTPSLVFTYPSTPEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
: : .:.. .: .: .:
CCDS98 ----FDD---FLFPASSRPSGSETARSVPDMDLSGSFYAADWEPLHSGSLGMGPMATELE
270 280 290 300 310 320
271 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:40:47 2016 done: Fri Nov 4 08:40:48 2016
Total Scan time: 2.810 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]