FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7561, 207 aa
  1>>>pF1KB7561 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2932+/-0.000929; mu= 13.7956+/- 0.056
 mean_var=61.6272+/-12.241, 0's: 0 Z-trim(105.0): 39  B-trim: 126 in 1/49
 Lambda= 0.163376
 statistics sampled from 8174 (8208) to 8174 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.252), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS9098.1 NFYB gene_id:4801|Hs108|chr12           ( 207) 1341 324.4 3.1e-89
CCDS744.1 DR1 gene_id:1810|Hs108|chr1              ( 176)  253 67.9 4.3e-12
CCDS6795.1 POLE3 gene_id:54107|Hs108|chr9          ( 147)  233 63.2 9.7e-11


>>CCDS9098.1 NFYB gene_id:4801|Hs108|chr12                (207 aa)
 initn: 1341 init1: 1341 opt: 1341  Z-score: 1715.4  bits: 324.4 E(32554): 3.1e-89
Smith-Waterman score: 1341; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KB7 MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 AMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLIT
              130       140       150       160       170       180

              190       200       
pF1KB7 TDGQQQNVMVYTTSYQQISGVQQIQFS
       :::::::::::::::::::::::::::
CCDS90 TDGQQQNVMVYTTSYQQISGVQQIQFS
              190       200       

>>CCDS744.1 DR1 gene_id:1810|Hs108|chr1                   (176 aa)
 initn: 236 init1: 195 opt: 253  Z-score: 330.6  bits: 67.9 E(32554): 4.3e-12
Smith-Waterman score: 253; 31.6% identity (65.8% similar) in 155 aa overlap (54-207:8-154)

            30        40        50        60        70        80   
pF1KB7 GSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAK
                                     ..:. .: : . ...:...:.. ..:.::.
CCDS74                        MASSSGNDDDLTIPRAAINKMIKETLPNV-RVANDAR
                                      10        20         30      

            90       100       110       120       130       140   
pF1KB7 ECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE
       : : .: .::: .:.:::.: :.. ..:::. : .. :. .::: ::.  .:  ::. . 
CCDS74 ELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKT
         40        50        60        70        80        90      

            150       160       170       180       190       200  
pF1KB7 -AMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
        :.: .:    : .  ..:.  . :: .  :    :..   :::  ..     :. ...:
CCDS74 VALKRRK----ASSRLENLG--IPEEELLRQQQE-LFAKARQQQAELAQQEWLQMQQAAQ
        100           110         120        130       140         

                                  
pF1KB7 QIQFS                      
       : :..                      
CCDS74 QAQLAAASASASNQAGSSQDEEDDDDI
     150       160       170      

>>CCDS6795.1 POLE3 gene_id:54107|Hs108|chr9               (147 aa)
 initn: 233 init1: 217 opt: 233  Z-score: 306.3  bits: 63.2 E(32554): 9.7e-11
Smith-Waterman score: 233; 38.1% identity (71.1% similar) in 97 aa overlap (53-149:4-100)

             30        40        50        60        70        80  
pF1KB7 GGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDA
                                     : .:. :: : ..::.:.:.:.  .:.:.:
CCDS67                            MAERPEDLNLPNAVITRIIKEALPDGVNISKEA
                                          10        20        30   

             90       100       110       120       130       140  
pF1KB7 KECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR
       .  ... .: :. . :: :..   . ::::.:. :.: ::  . :. .: :::  :. .:
CCDS67 RSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR
            40        50        60        70        80        90   

            150       160       170       180       190       200  
pF1KB7 EAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
       . .::.:                                                     
CCDS67 REQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN      
           100       110       120       130       140             




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:42:33 2016 done: Fri Nov  4 08:42:34 2016
 Total Scan time:  1.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]