FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7562, 274 aa
  1>>>pF1KB7562 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4622+/-0.000782; mu= -1.6128+/- 0.047
 mean_var=237.6083+/-48.050, 0's: 0 Z-trim(117.5): 11  B-trim: 175 in 1/52
 Lambda= 0.083204
 statistics sampled from 18216 (18226) to 18216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.56), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS8087.1 BATF2 gene_id:116071|Hs108|chr11        ( 274) 1905 240.4 1.1e-63
CCDS76429.1 BATF2 gene_id:116071|Hs108|chr11       ( 250) 1595 203.1 1.6e-52
CCDS73317.1 BATF2 gene_id:116071|Hs108|chr11       ( 189) 1325 170.6 7.3e-43


>>CCDS8087.1 BATF2 gene_id:116071|Hs108|chr11             (274 aa)
 initn: 1905 init1: 1905 opt: 1905  Z-score: 1257.0  bits: 240.4 E(32554): 1.1e-63
Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KB7 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH
              190       200       210       220       230       240

              250       260       270    
pF1KB7 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
       ::::::::::::::::::::::::::::::::::
CCDS80 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
              250       260       270    

>>CCDS76429.1 BATF2 gene_id:116071|Hs108|chr11            (250 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 1056.4  bits: 203.1 E(32554): 1.6e-52
Smith-Waterman score: 1595; 99.1% identity (99.6% similar) in 230 aa overlap (45-274:21-250)

           20        30        40        50        60        70    
pF1KB7 PKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWWS
                                     . ::::::::::::::::::::::::::::
CCDS76           MAPVGKRIGGLGDTRVGGPCISQQHESLEKDNLALRKEIQSLQAELAWWS
                         10        20        30        40        50

           80        90       100       110       120       130    
pF1KB7 RTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQ
               60        70        80        90       100       110

          140       150       160       170       180       190    
pF1KB7 PLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSKLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSKLSA
              120       130       140       150       160       170

          200       210       220       230       240       250    
pF1KB7 LQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSAATWQGLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSAATWQGLVV
              180       190       200       210       220       230

          260       270    
pF1KB7 DPSPHPLLAFPLLSSAQVHF
       ::::::::::::::::::::
CCDS76 DPSPHPLLAFPLLSSAQVHF
              240       250

>>CCDS73317.1 BATF2 gene_id:116071|Hs108|chr11            (189 aa)
 initn: 1325 init1: 1325 opt: 1325  Z-score: 883.0  bits: 170.6 E(32554): 7.3e-43
Smith-Waterman score: 1325; 100.0% identity (100.0% similar) in 189 aa overlap (86-274:1-189)

          60        70        80        90       100       110     
pF1KB7 NLALRKEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQH
                                     ::::::::::::::::::::::::::::::
CCDS73                               MDCASCSAPGLLGCWDQAEGLLGPGPQGQH
                                             10        20        30

         120       130       140       150       160       170     
pF1KB7 GCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPL
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KB7 LFASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARL
              100       110       120       130       140       150

         240       250       260       270    
pF1KB7 QSREHKPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
       :::::::::::::::::::::::::::::::::::::::
CCDS73 QSREHKPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
              160       170       180         




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:43:02 2016 done: Fri Nov  4 08:43:02 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]