FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7562, 274 aa
  1>>>pF1KB7562 274 - 274 aa - 274 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0202+/-0.000305; mu= -4.6146+/- 0.019
 mean_var=264.8467+/-53.363, 0's: 0 Z-trim(125.3): 13  B-trim: 27 in 1/57
 Lambda= 0.078809
 statistics sampled from 48702 (48720) to 48702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.571), width:  16
 Scan time:  8.280

The best scores are:                                      opt bits E(85289)
NP_612465 (OMIM: 614983) basic leucine zipper tran ( 274) 1905 228.6   1e-59
NP_001287736 (OMIM: 614983) basic leucine zipper t ( 250) 1595 193.3 3.8e-49
NP_001287737 (OMIM: 614983) basic leucine zipper t ( 189) 1325 162.5 5.3e-40
NP_061134 (OMIM: 612470) basic leucine zipper tran ( 127)  249 40.0  0.0026
NP_006390 (OMIM: 612476) basic leucine zipper tran ( 125)  244 39.5  0.0038


>>NP_612465 (OMIM: 614983) basic leucine zipper transcri  (274 aa)
 initn: 1905 init1: 1905 opt: 1905  Z-score: 1193.2  bits: 228.6 E(85289): 1e-59
Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KB7 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH
              190       200       210       220       230       240

              250       260       270    
pF1KB7 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
       ::::::::::::::::::::::::::::::::::
NP_612 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
              250       260       270    

>>NP_001287736 (OMIM: 614983) basic leucine zipper trans  (250 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 1003.3  bits: 193.3 E(85289): 3.8e-49
Smith-Waterman score: 1595; 99.1% identity (99.6% similar) in 230 aa overlap (45-274:21-250)

           20        30        40        50        60        70    
pF1KB7 PKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWWS
                                     . ::::::::::::::::::::::::::::
NP_001           MAPVGKRIGGLGDTRVGGPCISQQHESLEKDNLALRKEIQSLQAELAWWS
                         10        20        30        40        50

           80        90       100       110       120       130    
pF1KB7 RTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQ
               60        70        80        90       100       110

          140       150       160       170       180       190    
pF1KB7 PLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSKLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSKLSA
              120       130       140       150       160       170

          200       210       220       230       240       250    
pF1KB7 LQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSAATWQGLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSAATWQGLVV
              180       190       200       210       220       230

          260       270    
pF1KB7 DPSPHPLLAFPLLSSAQVHF
       ::::::::::::::::::::
NP_001 DPSPHPLLAFPLLSSAQVHF
              240       250

>>NP_001287737 (OMIM: 614983) basic leucine zipper trans  (189 aa)
 initn: 1325 init1: 1325 opt: 1325  Z-score: 839.1  bits: 162.5 E(85289): 5.3e-40
Smith-Waterman score: 1325; 100.0% identity (100.0% similar) in 189 aa overlap (86-274:1-189)

          60        70        80        90       100       110     
pF1KB7 NLALRKEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQH
                                     ::::::::::::::::::::::::::::::
NP_001                               MDCASCSAPGLLGCWDQAEGLLGPGPQGQH
                                             10        20        30

         120       130       140       150       160       170     
pF1KB7 GCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPL
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KB7 LFASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARL
              100       110       120       130       140       150

         240       250       260       270    
pF1KB7 QSREHKPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
       :::::::::::::::::::::::::::::::::::::::
NP_001 QSREHKPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
              160       170       180         

>>NP_061134 (OMIM: 612470) basic leucine zipper transcri  (127 aa)
 initn: 247 init1: 224 opt: 249  Z-score: 180.4  bits: 40.0 E(85289): 0.0026
Smith-Waterman score: 249; 47.4% identity (84.2% similar) in 76 aa overlap (12-86:29-104)

                                10        20         30        40  
pF1KB7                  MHLCGGNGLLTQTDPKEQQRQLKK-QKNRAAAQRSRQKHTDKA
                                   : .:....:.... .:::.::::::.:.:.::
NP_061 MSQGLPAAGSVLQRSVAAPGNQPQPQPQQQSPEDDDRKVRRREKNRVAAQRSRKKQTQKA
               10        20        30        40        50        60

             50        60        70        80        90       100  
pF1KB7 DALHQQHESLEKDNLALRKEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQ
       : ::...::::..:  ::.:: .:  ::   ...:. ::..::.                
NP_061 DKLHEEYESLEQENTMLRREIGKLTEELKHLTEALKEHEKMCPLLLCPMNFVPVPPRPDP
               70        80        90       100       110       120

            110       120       130       140       150       160  
pF1KB7 AEGLLGPGPQGQHGCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAV
                                                                   
NP_061 VAGCLPR                                                     
                                                                   

>>NP_006390 (OMIM: 612476) basic leucine zipper transcri  (125 aa)
 initn: 244 init1: 230 opt: 244  Z-score: 177.4  bits: 39.5 E(85289): 0.0038
Smith-Waterman score: 244; 47.0% identity (74.7% similar) in 83 aa overlap (12-94:21-103)

                        10        20        30        40        50 
pF1KB7          MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHES
                           : .  . .:  ...::: :::.:::..:.:::.:: . :.
NP_006 MPHSSDSSDSSFSRSPPPGKQDSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESED
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB7 LEKDNLALRKEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGP
       :::.: ::::::..:  :: ... .:. :: :: .  ::  .:                 
NP_006 LEKQNAALRKEIKQLTEELKYFTSVLNSHEPLCSVLAASTPSPPEVVYSAHAFHQPHVSS
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KB7 QGQHGCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLS
                                                                   
NP_006 PRFQP                                                       
                                                                   




274 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:43:03 2016 done: Fri Nov  4 08:43:04 2016
 Total Scan time:  8.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]