FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7564, 275 aa
  1>>>pF1KB7564 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3350+/-0.000876; mu= 3.7653+/- 0.052
 mean_var=266.6612+/-57.403, 0's: 0 Z-trim(115.6): 768  B-trim: 877 in 1/51
 Lambda= 0.078541
 statistics sampled from 15240 (16178) to 15240 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.497), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS13132.1 OVOL2 gene_id:58495|Hs108|chr20        ( 275) 1906 228.3 4.7e-60
CCDS8112.1 OVOL1 gene_id:5017|Hs108|chr11          ( 267)  918 116.3 2.3e-26
CCDS82333.1 OVOL3 gene_id:728361|Hs108|chr19       ( 190)  579 77.7 6.7e-15


>>CCDS13132.1 OVOL2 gene_id:58495|Hs108|chr20             (275 aa)
 initn: 1906 init1: 1906 opt: 1906  Z-score: 1191.7  bits: 228.3 E(32554): 4.7e-60
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQRPVARSKIKFTTGTCSDSVVHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQRPVARSKIKFTTGTCSDSVVHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNVC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPGS
              190       200       210       220       230       240

              250       260       270     
pF1KB7 SFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
       :::::::::::::::::::::::::::::::::::
CCDS13 SFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
              250       260       270     

>>CCDS8112.1 OVOL1 gene_id:5017|Hs108|chr11               (267 aa)
 initn: 918 init1: 753 opt: 918  Z-score: 586.8  bits: 116.3 E(32554): 2.3e-26
Smith-Waterman score: 918; 52.4% identity (71.6% similar) in 271 aa overlap (1-268:1-267)

               10        20        30        40        50        60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
       ::..::::.  ...  :.:.:::::.:.. :.::.::     ::.  :    : .   : 
CCDS81 MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLG---FCPPQPYREPEPSVAEPPSC
               10        20        30           40        50       

               70        80        90          100       110       
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSV
         .   . ..::   ::   .     .:   :::.  :   .   :.:.: : :   .. 
CCDS81 PLALNMSLRDSSYSMAPGPCVVAQLPSEDM-GHLTDPQSRDHGFLRTKMKVTLGDSPSGD
        60        70        80         90       100       110      

       120       130       140       150       160       170       
pF1KB7 VHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKC
       . .: .: :.:  :::::::.::::.:::::::.::::::::::::::::::::.:::::
CCDS81 LFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKC
        120       130       140       150       160       170      

       180       190       200       210       220       230       
pF1KB7 NVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAH
       ..:.:::::::::::::::::::::.::::.:: ::::::.:: :. .::   ::..  :
CCDS81 SLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHH
        180       190       200       210       220       230      

       240       250       260       270     
pF1KB7 PGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
       : : .:.:::::.:. ::. .::  : .  :       
CCDS81 PDSPLLRKTSKKVAVALQNTVTSLLQGSPHL       
        240       250       260              

>>CCDS82333.1 OVOL3 gene_id:728361|Hs108|chr19            (190 aa)
 initn: 794 init1: 559 opt: 579  Z-score: 380.9  bits: 77.7 E(32554): 6.7e-15
Smith-Waterman score: 633; 45.4% identity (63.0% similar) in 238 aa overlap (1-237:1-187)

               10        20        30        40        50        60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
       ::..:::. :    .  .: .:::. :.:.:::            :: : ::        
CCDS82 MPRAFLVRSRR--PQPPNWGHLPDQLRGDAYIP------------DCSSLGGP-------
               10          20        30                            

               70        80         90       100       110         
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGD-AEGPDGHLATKQRPVARSKIKFTTGTCSDSVVH
           :  :..::: . : .  :  :. . .: :       :          :: .     
CCDS82 ----P--AQQSSSVRDPWTAQPTQGNLTSAPRG-------P----------GTLG-----
          40          50        60                         70      

     120       130       140       150       160       170         
pF1KB7 SCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNV
        : :: :.: :::::.::::::. :.::::  :::::.:.::::::.::::::::..:..
CCDS82 -CPLCPKAFPLQRMLTRHLKCHSPVRRHLCRCCGKGFHDAFDLKRHMRTHTGIRPFRCSA
               80        90       100       110       120       130

     180       190       200       210       220       230         
pF1KB7 CNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPG
       :.::::::::::.:: :.::   .:::..::.::.::::::.:. .. : : .  . :  
CCDS82 CGKAFTQRCSLEAHLAKVHGQPASYAYRERREKLHVCEDCGFTS-SRPDTYAQHRALHRA
              140       150       160       170        180         

     240       250       260       270     
pF1KB7 SSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
                                           
CCDS82 A                                   
     190                                   




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:44:17 2016 done: Fri Nov  4 08:44:17 2016
 Total Scan time:  2.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]