Result of FASTA (omim) for
pF1KB7565
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7565, 209 aa
1>>>pF1KB7565 209 - 209 aa - 209 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6700+/-0.00034; mu= -0.1724+/- 0.021
mean_var=257.8198+/-51.752, 0's: 0 Z-trim(123.6): 94 B-trim: 338 in 1/56
Lambda= 0.079876
statistics sampled from 43655 (43759) to 43655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.513), width: 16
Scan time: 6.760
The best scores are: opt bits E(85289)
NP_001124160 (OMIM: 163906) high mobility group pr ( 209) 1431 176.8 2.2e-44
NP_001124161 (OMIM: 163906) high mobility group pr ( 209) 1431 176.8 2.2e-44
NP_002120 (OMIM: 163906) high mobility group prote ( 209) 1431 176.8 2.2e-44
NP_001300821 (OMIM: 163905) high mobility group pr ( 215) 1182 148.1 9.9e-36
NP_002119 (OMIM: 163905) high mobility group prote ( 215) 1182 148.1 9.9e-36
NP_001300822 (OMIM: 163905) high mobility group pr ( 215) 1182 148.1 9.9e-36
NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 1016 129.0 5.4e-30
NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 1016 129.0 5.4e-30
NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 1016 129.0 5.4e-30
NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 1016 129.0 5.8e-30
NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879) 865 112.2 2.6e-24
NP_003137 (OMIM: 604328) FACT complex subunit SSRP ( 709) 294 46.3 0.00014
XP_016873669 (OMIM: 604328) PREDICTED: FACT comple ( 843) 294 46.4 0.00016
NP_001092266 (OMIM: 611163) TOX high mobility grou ( 464) 248 40.8 0.0042
NP_116272 (OMIM: 611163) TOX high mobility group b ( 464) 248 40.8 0.0042
NP_001092267 (OMIM: 611163) TOX high mobility grou ( 506) 248 40.9 0.0045
XP_006723947 (OMIM: 611163) PREDICTED: TOX high mo ( 515) 248 40.9 0.0046
XP_016869574 (OMIM: 606863) PREDICTED: thymocyte s ( 504) 242 40.2 0.0073
NP_055544 (OMIM: 606863) thymocyte selection-assoc ( 526) 242 40.2 0.0075
XP_011521304 (OMIM: 611416) PREDICTED: TOX high mo ( 553) 239 39.9 0.0098
>>NP_001124160 (OMIM: 163906) high mobility group protei (209 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 917.7 bits: 176.8 E(85289): 2.2e-44
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
:::::::::::::::::::::::::::::
NP_001 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_001124161 (OMIM: 163906) high mobility group protei (209 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 917.7 bits: 176.8 E(85289): 2.2e-44
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
:::::::::::::::::::::::::::::
NP_001 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_002120 (OMIM: 163906) high mobility group protein B (209 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 917.7 bits: 176.8 E(85289): 2.2e-44
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
:::::::::::::::::::::::::::::
NP_002 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_001300821 (OMIM: 163905) high mobility group protei (215 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 762.4 bits: 148.1 E(85289): 9.9e-36
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_001 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_001 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_001 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
::::.: :..::.::.:.:.:.:::::::
NP_001 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_002119 (OMIM: 163905) high mobility group protein B (215 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 762.4 bits: 148.1 E(85289): 9.9e-36
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_002 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_002 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_002 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
::::.: :..::.::.:.:.:.:::::::
NP_002 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_001300822 (OMIM: 163905) high mobility group protei (215 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 762.4 bits: 148.1 E(85289): 9.9e-36
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_001 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_001 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_001 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
::::.: :..::.::.:.:.:.:::::::
NP_001 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_001288157 (OMIM: 300193,300915) high mobility group (200 aa)
initn: 1151 init1: 494 opt: 1016 Z-score: 659.5 bits: 129.0 E(85289): 5.4e-30
Smith-Waterman score: 1016; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
:.::::.::.::::.:::::::::::::::.:. ::::::::::::::::::.::::::
NP_001 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
..:::.::.:::::::.: : :: :: ::::::::::::.::::::: :::::: .::.
NP_001 DEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. . ..:::: ::::::::::::.: :..::: . : :::..
NP_001 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKV--
120 130 140 150 160 170
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
..:: : ::::::::::.: ::::::
NP_001 ARKKVEEEDEEEEEEEEEE-EEEEDE
180 190 200
>>NP_005333 (OMIM: 300193,300915) high mobility group pr (200 aa)
initn: 1151 init1: 494 opt: 1016 Z-score: 659.5 bits: 129.0 E(85289): 5.4e-30
Smith-Waterman score: 1016; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
:.::::.::.::::.:::::::::::::::.:. ::::::::::::::::::.::::::
NP_005 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
..:::.::.:::::::.: : :: :: ::::::::::::.::::::: :::::: .::.
NP_005 DEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. . ..:::: ::::::::::::.: :..::: . : :::..
NP_005 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKV--
120 130 140 150 160 170
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
..:: : ::::::::::.: ::::::
NP_005 ARKKVEEEDEEEEEEEEEE-EEEEDE
180 190 200
>>NP_001288158 (OMIM: 300193,300915) high mobility group (200 aa)
initn: 1151 init1: 494 opt: 1016 Z-score: 659.5 bits: 129.0 E(85289): 5.4e-30
Smith-Waterman score: 1016; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
:.::::.::.::::.:::::::::::::::.:. ::::::::::::::::::.::::::
NP_001 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
..:::.::.:::::::.: : :: :: ::::::::::::.::::::: :::::: .::.
NP_001 DEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
::::.::::::::.. . ..:::: ::::::::::::.: :..::: . : :::..
NP_001 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKV--
120 130 140 150 160 170
190 200
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
..:: : ::::::::::.: ::::::
NP_001 ARKKVEEEDEEEEEEEEEE-EEEEDE
180 190 200
>>NP_001288160 (OMIM: 300193,300915) high mobility group (220 aa)
initn: 1151 init1: 494 opt: 1016 Z-score: 658.9 bits: 129.0 E(85289): 5.8e-30
Smith-Waterman score: 1016; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:21-220)
10 20 30 40
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAE
:.::::.::.::::.:::::::::::::::.:. :::::
NP_001 MQRMEILPARKRNPFIIRIRMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 FSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPS
:::::::::::::.::::::..:::.::.:::::::.: : :: :: ::::::::::::
NP_001 FSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPS
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 AFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIA
.::::::: :::::: .::.::::.::::::::.. . ..:::: ::::::::::::.:
NP_001 GFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVA
120 130 140 150 160 170
170 180 190 200
pF1KB7 AYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE
:..::: . : :::.. ..:: : ::::::::::.: ::::::
NP_001 DYKSKGKFD-GAKGPAKV--ARKKVEEEDEEEEEEEEEE-EEEEDE
180 190 200 210 220
209 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:44:49 2016 done: Fri Nov 4 08:44:50 2016
Total Scan time: 6.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]