FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7567, 210 aa
  1>>>pF1KB7567 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6488+/-0.000876; mu= 3.8514+/- 0.053
 mean_var=133.2934+/-25.921, 0's: 0 Z-trim(110.6): 21  B-trim: 0 in 0/52
 Lambda= 0.111089
 statistics sampled from 11698 (11706) to 11698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS8892.1 SARNP gene_id:84324|Hs108|chr12         ( 210) 1306 219.9 9.3e-58


>>CCDS8892.1 SARNP gene_id:84324|Hs108|chr12              (210 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1150.4  bits: 219.9 E(32554): 9.3e-58
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB7 MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 EEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 AARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
              130       140       150       160       170       180

              190       200       210
pF1KB7 FGIVTSSAGTGTTEDTEAKKRKRAERFGIA
       ::::::::::::::::::::::::::::::
CCDS88 FGIVTSSAGTGTTEDTEAKKRKRAERFGIA
              190       200       210




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:45:54 2016 done: Fri Nov  4 08:45:54 2016
 Total Scan time:  2.330 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]