FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7567, 210 aa
  1>>>pF1KB7567 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7058+/-0.000366; mu= 3.6025+/- 0.023
 mean_var=144.6676+/-29.143, 0's: 0 Z-trim(118.1): 11  B-trim: 1443 in 1/54
 Lambda= 0.106632
 statistics sampled from 30684 (30694) to 30684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.36), width:  16
 Scan time:  6.590

The best scores are:                                      opt bits E(85289)
NP_149073 (OMIM: 610049) SAP domain-containing rib ( 210) 1306 211.8 6.8e-55


>>NP_149073 (OMIM: 610049) SAP domain-containing ribonuc  (210 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1106.5  bits: 211.8 E(85289): 6.8e-55
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB7 MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 EEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 AARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKER
              130       140       150       160       170       180

              190       200       210
pF1KB7 FGIVTSSAGTGTTEDTEAKKRKRAERFGIA
       ::::::::::::::::::::::::::::::
NP_149 FGIVTSSAGTGTTEDTEAKKRKRAERFGIA
              190       200       210




210 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:45:54 2016 done: Fri Nov  4 08:45:55 2016
 Total Scan time:  6.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]