FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7569, 211 aa
  1>>>pF1KB7569 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7329+/-0.000776; mu= 8.5972+/- 0.047
 mean_var=116.0032+/-22.403, 0's: 0 Z-trim(111.8): 9  B-trim: 0 in 0/52
 Lambda= 0.119080
 statistics sampled from 12658 (12661) to 12658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.389), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS4797.1 TAF11 gene_id:6882|Hs108|chr6           ( 211) 1354 242.6 1.4e-64
CCDS59014.1 TAF11 gene_id:6882|Hs108|chr6          ( 154)  866 158.7 1.8e-39


>>CCDS4797.1 TAF11 gene_id:6882|Hs108|chr6                (211 aa)
 initn: 1354 init1: 1354 opt: 1354  Z-score: 1273.1  bits: 242.6 E(32554): 1.4e-64
Smith-Waterman score: 1354; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB7 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
              130       140       150       160       170       180

              190       200       210 
pF1KB7 PLQPKHMREAVRRLKSKGQIPNSKHKKIIFF
       :::::::::::::::::::::::::::::::
CCDS47 PLQPKHMREAVRRLKSKGQIPNSKHKKIIFF
              190       200       210 

>>CCDS59014.1 TAF11 gene_id:6882|Hs108|chr6               (154 aa)
 initn: 866 init1: 866 opt: 866  Z-score: 821.9  bits: 158.7 E(32554): 1.8e-39
Smith-Waterman score: 866; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
       ::::::::::::::::                                            
CCDS59 YEMYRRSAFPKAAIKRHWMCVRSGEKCHHYNPNI                          
              130       140       150                              




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:46:29 2016 done: Fri Nov  4 08:46:30 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]