FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7569, 211 aa
  1>>>pF1KB7569 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9679+/-0.000321; mu= 7.2082+/- 0.020
 mean_var=117.9625+/-23.434, 0's: 0 Z-trim(119.3): 4  B-trim: 606 in 3/53
 Lambda= 0.118087
 statistics sampled from 33219 (33223) to 33219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.39), width:  16
 Scan time:  6.870

The best scores are:                                      opt bits E(85289)
NP_005634 (OMIM: 600772) transcription initiation  ( 211) 1354 240.7 1.3e-63
XP_011513129 (OMIM: 600772) PREDICTED: transcripti ( 167)  975 176.1 2.9e-44
NP_001257417 (OMIM: 600772) transcription initiati ( 154)  866 157.5 1.1e-38


>>NP_005634 (OMIM: 600772) transcription initiation fact  (211 aa)
 initn: 1354 init1: 1354 opt: 1354  Z-score: 1263.0  bits: 240.7 E(85289): 1.3e-63
Smith-Waterman score: 1354; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB7 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
              130       140       150       160       170       180

              190       200       210 
pF1KB7 PLQPKHMREAVRRLKSKGQIPNSKHKKIIFF
       :::::::::::::::::::::::::::::::
NP_005 PLQPKHMREAVRRLKSKGQIPNSKHKKIIFF
              190       200       210 

>>XP_011513129 (OMIM: 600772) PREDICTED: transcription i  (167 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 915.6  bits: 176.1 E(85289): 2.9e-44
Smith-Waterman score: 975; 98.1% identity (100.0% similar) in 157 aa overlap (55-211:11-167)

           30        40        50        60        70        80    
pF1KB7 PGDPGATDTDGIPEETDGDADVDLKEAAAEEGELESQDVSDLTTVEREDSSLLNPAAKKL
                                     ...:::::::::::::::::::::::::::
XP_011                     MEGTLLTSPLKNKLESQDVSDLTTVEREDSSLLNPAAKKL
                                   10        20        30        40

           90       100       110       120       130       140    
pF1KB7 KIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGT
               50        60        70        80        90       100

          150       160       170       180       190       200    
pF1KB7 SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSK
              110       120       130       140       150       160

          210 
pF1KB7 HKKIIFF
       :::::::
XP_011 HKKIIFF
              

>>NP_001257417 (OMIM: 600772) transcription initiation f  (154 aa)
 initn: 866 init1: 866 opt: 866  Z-score: 815.7  bits: 157.5 E(85289): 1.1e-38
Smith-Waterman score: 866; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
       ::::::::::::::::                                            
NP_001 YEMYRRSAFPKAAIKRHWMCVRSGEKCHHYNPNI                          
              130       140       150                              




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:46:30 2016 done: Fri Nov  4 08:46:31 2016
 Total Scan time:  6.870 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]