FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7571, 205 aa
  1>>>pF1KB7571 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6164+/-0.000286; mu= -3.5060+/- 0.018
 mean_var=243.5838+/-48.594, 0's: 0 Z-trim(125.9): 11  B-trim: 88 in 1/61
 Lambda= 0.082177
 statistics sampled from 50626 (50647) to 50626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.594), width:  16
 Scan time:  7.420

The best scores are:                                      opt bits E(85289)
NP_006433 (OMIM: 602289) dr1-associated corepresso ( 205) 1387 175.7 4.5e-44


>>NP_006433 (OMIM: 602289) dr1-associated corepressor [H  (205 aa)
 initn: 1387 init1: 1387 opt: 1387  Z-score: 912.2  bits: 175.7 E(85289): 4.5e-44
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB7 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFA
              130       140       150       160       170       180

              190       200     
pF1KB7 STLPLPPAPPGPSAPDEEDEEDYDS
       :::::::::::::::::::::::::
NP_006 STLPLPPAPPGPSAPDEEDEEDYDS
              190       200     




205 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:47:03 2016 done: Fri Nov  4 08:47:04 2016
 Total Scan time:  7.420 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]