Result of FASTA (ccds) for
pF1KB7581
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7581, 175 aa
1>>>pF1KB7581 175 - 175 aa - 175 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5106+/-0.000537; mu= 13.3840+/- 0.033
mean_var=76.5732+/-15.223, 0's: 0 Z-trim(114.7): 7 B-trim: 16 in 1/51
Lambda= 0.146567
statistics sampled from 15290 (15297) to 15290 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.47), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS55651.1 BGLAP gene_id:100527963|Hs108|chr1 ( 175) 1160 253.3 5.8e-68
CCDS55650.1 BGLAP gene_id:100527963|Hs108|chr1 ( 220) 792 175.5 1.8e-44
CCDS30886.1 PMF1 gene_id:11243|Hs108|chr1 ( 205) 791 175.3 2e-44
CCDS60299.1 BGLAP gene_id:100527963|Hs108|chr1 ( 211) 791 175.3 2.1e-44
CCDS55649.1 PMF1 gene_id:11243|Hs108|chr1 ( 180) 790 175.0 2.1e-44
CCDS55648.1 PMF1 gene_id:11243|Hs108|chr1 ( 207) 525 119.0 1.7e-27
CCDS72944.1 BGLAP gene_id:100527963|Hs108|chr1 ( 142) 332 78.1 2.5e-15
>>CCDS55651.1 BGLAP gene_id:100527963|Hs108|chr1 (175 aa)
initn: 1160 init1: 1160 opt: 1160 Z-score: 1333.7 bits: 253.3 E(32554): 5.8e-68
Smith-Waterman score: 1160; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
130 140 150 160 170
>>CCDS55650.1 BGLAP gene_id:100527963|Hs108|chr1 (220 aa)
initn: 797 init1: 776 opt: 792 Z-score: 911.7 bits: 175.5 E(32554): 1.8e-44
Smith-Waterman score: 955; 77.8% identity (78.3% similar) in 207 aa overlap (1-162:1-207)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
70 80 90 100 110 120
130
pF1KB7 PA-------------------W--------------------------CEAQRCRVQQRC
:: : ::::::::::::
CCDS55 PACNGTPCGAMCRNRRPRTSSWQMPSWQGGGRWRSCSYRSRPSSRPGRCEAQRCRVQQRC
130 140 150 160 170 180
140 150 160 170
pF1KB7 SLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
:::::::::::::::::::::::::::
CCDS55 SLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
190 200 210 220
>>CCDS30886.1 PMF1 gene_id:11243|Hs108|chr1 (205 aa)
initn: 791 init1: 791 opt: 791 Z-score: 911.0 bits: 175.3 E(32554): 2e-44
Smith-Waterman score: 791; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS30 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
:::
CCDS30 PAWRPSGIPEKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQLQV
130 140 150 160 170 180
>>CCDS60299.1 BGLAP gene_id:100527963|Hs108|chr1 (211 aa)
initn: 791 init1: 791 opt: 791 Z-score: 910.8 bits: 175.3 E(32554): 2.1e-44
Smith-Waterman score: 791; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS60 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
:::
CCDS60 PAWRPSGIPEKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQLQV
130 140 150 160 170 180
>>CCDS55649.1 PMF1 gene_id:11243|Hs108|chr1 (180 aa)
initn: 793 init1: 776 opt: 790 Z-score: 910.7 bits: 175.0 E(32554): 2.1e-44
Smith-Waterman score: 790; 78.4% identity (84.4% similar) in 167 aa overlap (1-159:1-167)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CYKCFYQLQPAMTQQIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PA--------WCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQE
:: :. .: :... :.::. : .. : : :
CCDS55 PACNGTPCGAMCRNRRPRTSSWQMPSWQGGGRWRSCSYRSRPSSRPGRLYTENRGSWLLC
130 140 150 160 170 180
pF1KB7 GGV
>>CCDS55648.1 PMF1 gene_id:11243|Hs108|chr1 (207 aa)
initn: 541 init1: 337 opt: 525 Z-score: 607.0 bits: 119.0 E(32554): 1.7e-27
Smith-Waterman score: 525; 73.8% identity (81.0% similar) in 126 aa overlap (1-123:1-125)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS55 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSSPLLHW
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 CYKCFYQLQPAMTQRIYDKF---IAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKV
. .: :. : . . : .: . .::::::::::::::::::::::::::::
CCDS55 DGSAGPRL-PSGGQSVKQAFSWAACRLPQGRKEEISDIKEEGNLEAVLNALDKIVEEGKV
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 RKEPAWCEAQRCRVQQRCSLCVQAGGQRGSEETQALPVSMAGSPSPLPGSPGAQEGGV
::::::
CCDS55 RKEPAWRPSGIPEKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQ
120 130 140 150 160 170
>>CCDS72944.1 BGLAP gene_id:100527963|Hs108|chr1 (142 aa)
initn: 332 init1: 332 opt: 332 Z-score: 388.8 bits: 78.1 E(32554): 2.5e-15
Smith-Waterman score: 332; 100.0% identity (100.0% similar) in 53 aa overlap (1-53:1-53)
10 20 30 40 50 60
pF1KB7 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGSYQRFTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAEASSANLGSGCEEKRHEGSSSESVPPGTTISRVKLLDTMVDTFLQKLVAAGRRPSGIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CYKCFYQLQPAMTQRIYDKFIAQLQTSIREEISDIKEEGNLEAVLNALDKIVEEGKVRKE
CCDS72 EKDLHSVMAPYFLQQRDTLRRHVQKQEAENQQLADAVLAGRRQVEELQLQVQAQQQAWQV
70 80 90 100 110 120
175 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:16:20 2016 done: Fri Nov 4 20:16:20 2016
Total Scan time: 1.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]