Result of FASTA (ccds) for
pF1KB7587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7587, 224 aa
1>>>pF1KB7587 224 - 224 aa - 224 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8355+/-0.000608; mu= 13.8612+/- 0.037
mean_var=98.1400+/-20.336, 0's: 0 Z-trim(115.5): 39 B-trim: 703 in 1/51
Lambda= 0.129465
statistics sampled from 15972 (16012) to 15972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.492), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS1433.1 MYOG gene_id:4656|Hs108|chr1 ( 224) 1536 295.9 1.4e-80
CCDS9019.1 MYF6 gene_id:4618|Hs108|chr12 ( 242) 527 107.4 8e-24
CCDS9020.1 MYF5 gene_id:4617|Hs108|chr12 ( 255) 471 97.0 1.2e-20
CCDS7826.1 MYOD1 gene_id:4654|Hs108|chr11 ( 320) 422 87.9 7.9e-18
>>CCDS1433.1 MYOG gene_id:4656|Hs108|chr1 (224 aa)
initn: 1536 init1: 1536 opt: 1536 Z-score: 1560.2 bits: 295.9 E(32554): 1.4e-80
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB7 MELYETSPYFYQEPRFYDGENYLPVHLQGFEPPGYERTELTLSPEAPGPLEDKGLGTPEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MELYETSPYFYQEPRFYDGENYLPVHLQGFEPPGYERTELTLSPEAPGPLEDKGLGTPEH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLPKVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVPSECSSHSASCSPEWGSALEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVPSECSSHSASCSPEWGSALEFS
130 140 150 160 170 180
190 200 210 220
pF1KB7 ANPGDHLLTADPTDAHNLHSLTSIVDSITVEDVSVAFPDETMPN
::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ANPGDHLLTADPTDAHNLHSLTSIVDSITVEDVSVAFPDETMPN
190 200 210 220
>>CCDS9019.1 MYF6 gene_id:4618|Hs108|chr12 (242 aa)
initn: 542 init1: 463 opt: 527 Z-score: 541.2 bits: 107.4 E(32554): 8e-24
Smith-Waterman score: 570; 45.6% identity (64.0% similar) in 250 aa overlap (1-222:3-240)
10 20 30 40
pF1KB7 MELYETSPYFYQEPRFYDGENYLPVHLQGFE----PPGYERTELTLSP----------
:.:.::. ::. . :::: : :: .: : : .. ::::
CCDS90 MMMDLFETGSYFF----YLDGEN---VTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAG
10 20 30 40 50
50 60 70 80 90 100
pF1KB7 -EAPGP---LEDKGLGTPEHCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEA
.. : : :: : ::::::: ::::.:::::. .:::.::::::.:::::.:::
CCDS90 SDSSGEEHVLAPPGL-QPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 FEALKRSTLLNPNQRLPKVEILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVPS
:::::: :. ::::::::::::::::.:::::: :: :.:.:. . : : :.
CCDS90 FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQEL--GVDPFSYRPK
120 130 140 150 160 170
170 180 190 200 210
pF1KB7 ECSSHSA----SCSPEWGSA------LEFSANPGDHLLTADPTDAHNLHSLTSIVDSITV
. . ..: .:: .: :. : ..:. : . : . . .:. :.::::::.
CCDS90 QENLEGADFLRTCSSQWPSVSDHSRGLVITAKEGG--ASIDSSASSSLRCLSSIVDSISS
180 190 200 210 220
220
pF1KB7 EDVSVAFPDETMPN
:. .. .:..
CCDS90 EERKLPCVEEVVEK
230 240
>>CCDS9020.1 MYF5 gene_id:4617|Hs108|chr12 (255 aa)
initn: 461 init1: 393 opt: 471 Z-score: 484.3 bits: 97.0 E(32554): 1.2e-20
Smith-Waterman score: 471; 42.9% identity (64.8% similar) in 219 aa overlap (4-209:9-215)
10 20 30 40 50
pF1KB7 MELYETSPYFYQ-----EPRFYDGENYLPVHLQGFEPPGYERTELTLSPEAPGPL
. : :::. :. :....: .. .: : ...:: :
CCDS90 MDVMDGCQFSPSEYFYDGSCIPSPEGEFGDEFVP-RVAAF---GAHKAELQ------GSD
10 20 30 40 50
60 70 80 90 100
pF1KB7 EDKGLGTP--EHCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEAFEALKRST
::. . .: .: :.:: ::::.:::::...:::.:::.::.:::::::.:::.::: :
CCDS90 EDEHVRAPTGHHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 LLNPNQRLPKVEILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVP-SECSSHSA
:::::::::::::.::.::: :: :: .: : : . .: : :.::.
CCDS90 TTNPNQRLPKVEILRNAIRYIESLQELLR--EQVENYYSLPGQSCSEPTSPTSNCSDGMP
120 130 140 150 160
170 180 190 200 210 220
pF1KB7 SC-SPEWG---SALEFSANPG-DHLLTADPTDAHNLHSLTSIVDSITVEDVSVAFPDETM
: :: :. :... : ... ..: .. .: :..::: ::
CCDS90 ECNSPVWSRKSSTFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLA
170 180 190 200 210 220
pF1KB7 PN
CCDS90 SLSPVASTDSQPATPGASSSRLIYHVL
230 240 250
>>CCDS7826.1 MYOD1 gene_id:4654|Hs108|chr11 (320 aa)
initn: 444 init1: 382 opt: 422 Z-score: 433.5 bits: 87.9 E(32554): 7.9e-18
Smith-Waterman score: 434; 41.7% identity (64.3% similar) in 199 aa overlap (4-183:23-217)
10 20 30
pF1KB7 MELYETSPYFYQEP-------RFYDGENYLPVHLQGF-EPP
. :. ::..: ::.. . .:. .. .:
CCDS78 MELLSPPLRDVDLTAPDGSLCSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GYERTELTLSPEAPGPLEDKGLGTP--EHCPGQCLPWACKVCKRKSVSVDRRRAATLREK
. . .. : ::: ::. . .: .: :.:: ::::.::::....:::.:::.::.
CCDS78 EHSHFPAAVHP-APGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRER
70 80 90 100 110
100 110 120 130 140
pF1KB7 RRLKKVNEAFEALKRSTLLNPNQRLPKVEILRSAIQYIERLQALLSSLNQEERDLR---Y
:::.:::::::.::: : :::::::::::::.::.::: ::::: . . :
CCDS78 RRLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFY
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB7 RGG------GGPQPGVPSECSSHSASCSPEWGSALEFSANPGDHLLTADPTDAHNLHSLT
: :: . . :. :: ..:: . ...:. :
CCDS78 APGPLPPGRGGEHYSGDSDASSPRSNCSD---GMMDYSGPPSGARRRNCYEGAYYNEAPS
180 190 200 210 220 230
210 220
pF1KB7 SIVDSITVEDVSVAFPDETMPN
CCDS78 EPRPGKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSESPPRRQEAAAPSEGESSGD
240 250 260 270 280 290
224 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:52:22 2016 done: Fri Nov 4 08:52:22 2016
Total Scan time: 2.030 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]