FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7590, 290 aa
  1>>>pF1KB7590 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8657+/-0.000727; mu= 7.6350+/- 0.045
 mean_var=206.4688+/-42.768, 0's: 0 Z-trim(116.8): 174  B-trim: 924 in 1/53
 Lambda= 0.089258
 statistics sampled from 17276 (17465) to 17276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.536), width:  16
 Scan time:  3.220

The best scores are:                                      opt bits E(32554)
CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2           ( 290) 1940 261.2 6.5e-70
CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10         ( 334)  739 106.6 2.6e-23
CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10          ( 186)  488 74.0 9.2e-14


>>CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2                (290 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 1368.6  bits: 261.2 E(32554): 6.5e-70
Smith-Waterman score: 1940; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB7 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPP
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB7 LPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT
              250       260       270       280       290

>>CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10              (334 aa)
 initn: 691 init1: 598 opt: 739  Z-score: 532.0  bits: 106.6 E(32554): 2.6e-23
Smith-Waterman score: 747; 57.6% identity (71.0% similar) in 245 aa overlap (45-268:46-285)

           20        30        40        50        60        70    
pF1KB7 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD
                                     :  :. ..: :.   . . :..   :   :
CCDS44 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D
          20        30        40        50        60        70     

           80        90       100       110       120       130    
pF1KB7 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
       .:::::::::::.::::.::::::::::::::::::::::::::::::::::::::::::
CCDS44 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
             80        90       100       110       120       130  

          140       150       160       170       180       190    
pF1KB7 LARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATSNILRLLEQGRLLSV
       :::::::::::::::::::::::::::..: : :  : .::. :: ..::::::::::: 
CCDS44 LARQLNLSETQVKVWFQNRRTKQKKDQGKDSELR--SVVSETAATCSVLRLLEQGRLLSP
            140       150       160         170       180       190

          200               210       220        230       240     
pF1KB7 PRAPSLL------ALTPSL--PGLPASHRGTSLGDPRNSSPRL-NPLSSASASPPL----
       :  :.::      ::  .:  :.:::   :.. :.   ..    .: ..::  ::     
CCDS44 PGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGA
              200       210       220       230       240       250

                250            260       270       280       290   
pF1KB7 PPPLPAV---CFSSAP-----LLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT   
       : : ::      ..::     :..::.   ::: :                         
CCDS44 PGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSARY
              260       270       280       290       300       310

CCDS44 LSSSAFEPYSRTNNKEGAEKKALD
              320       330    

>>CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10               (186 aa)
 initn: 508 init1: 461 opt: 488  Z-score: 360.6  bits: 74.0 E(32554): 9.2e-14
Smith-Waterman score: 488; 62.6% identity (80.2% similar) in 131 aa overlap (45-174:46-173)

           20        30        40        50        60        70    
pF1KB7 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD
                                     :  :. ..: :.   . . :..   :   :
CCDS75 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D
          20        30        40        50        60        70     

           80        90       100       110       120       130    
pF1KB7 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
       .:::::::::::.::::.::::::::::::::::::::::::::::::::::::::::::
CCDS75 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
             80        90       100       110       120       130  

          140       150        160       170       180       190   
pF1KB7 LARQLNLSETQVKVWFQNRRTKQK-KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLS
       :::::::::::..   .:.: :.  : :..  .:. ... :                   
CCDS75 LARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRGWQPL      
            140       150       160       170       180            

           200       210       220       230       240       250   
pF1KB7 VPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSA




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:47:26 2016 done: Sat Nov  5 17:47:26 2016
 Total Scan time:  3.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]