Result of FASTA (ccds) for
pF1KB7601
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7601, 292 aa
1>>>pF1KB7601 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1279+/-0.00087; mu= 7.4383+/- 0.051
mean_var=190.6830+/-40.757, 0's: 0 Z-trim(113.3): 879 B-trim: 0 in 0/51
Lambda= 0.092879
statistics sampled from 12924 (13913) to 12924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.427), width: 16
Scan time: 2.760
The best scores are: opt bits E(32554)
CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16 ( 292) 2086 291.5 4.8e-79
CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8 ( 268) 837 124.1 1.1e-28
CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20 ( 264) 687 104.0 1.2e-22
CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8 ( 348) 581 90.0 2.8e-18
CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20 ( 307) 578 89.5 3.3e-18
CCDS42496.1 ZNF846 gene_id:162993|Hs108|chr19 ( 533) 422 68.9 9.5e-12
CCDS54214.1 ZNF177 gene_id:7730|Hs108|chr19 ( 481) 407 66.8 3.6e-11
CCDS12212.1 ZNF177 gene_id:7730|Hs108|chr19 ( 321) 404 66.2 3.6e-11
CCDS35075.1 ZNF782 gene_id:158431|Hs108|chr9 ( 699) 408 67.1 4.2e-11
>>CCDS32505.1 SNAI3 gene_id:333929|Hs108|chr16 (292 aa)
initn: 2086 init1: 2086 opt: 2086 Z-score: 1532.6 bits: 291.5 E(32554): 4.8e-79
Smith-Waterman score: 2086; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB7 MPRSFLVKTHSSHRVPNYRRLETQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQPWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPRSFLVKTHSSHRVPNYRRLETQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQPWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKDSLNHLNLPPLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKDSLNHLNLPPLLVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHCHLQVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHCHLQVG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEKPYACS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEKPYACS
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 HCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
250 260 270 280 290
>>CCDS6146.1 SNAI2 gene_id:6591|Hs108|chr8 (268 aa)
initn: 862 init1: 814 opt: 837 Z-score: 628.5 bits: 124.1 E(32554): 1.1e-28
Smith-Waterman score: 879; 51.4% identity (67.7% similar) in 294 aa overlap (1-289:1-265)
10 20 30 40 50
pF1KB7 MPRSFLVKTH-SSHRVPNYRRLETQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQPW
:::::::: : .. . ::: .:.:. : . : : :. :.: .:::
CCDS61 MPRSFLVKKHFNASKKPNYSELDTHTVI----------ISPYL---YESYSMPV-IPQPE
10 20 30 40
60 70 80 90 100 110
pF1KB7 DRSS-AVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD--SLNHL-NLP
:: : . :.. .: .::. : : . .:.. : .: : .: .
CCDS61 ILSSGAYSPITVWTTAAPFHAQLPNGLSPL--SGYSSSLGRVSPPPPSDTSSKDHSGSES
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 PLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHC
:. : . :. : :. . ::. :.: :.: : :..:::.:.::::
CCDS61 PISDEEERLQSKLS-DPHA-----IEAEK-------FQCNLCNKTYSTFSGLAKHKQLHC
110 120 130 140 150
180 190 200 210 220 230
pF1KB7 HLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEK
: . :.::::::::.::::::::::::::::.:::::::::::::::::.:::::::
CCDS61 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEK
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 PYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
:..: ::.::::::::::::::::::.:::.:. :.::::::::: .:::::::
CCDS61 PFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
220 230 240 250 260
>>CCDS13423.1 SNAI1 gene_id:6615|Hs108|chr20 (264 aa)
initn: 746 init1: 678 opt: 687 Z-score: 520.0 bits: 104.0 E(32554): 1.2e-22
Smith-Waterman score: 713; 45.9% identity (67.2% similar) in 296 aa overlap (1-290:1-263)
10 20 30 40 50
pF1KB7 MPRSFLVKTHSS-HRVPNYRRLE-TQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQ-
:::::::. :. .: ::: .:. .. :.. . .. .: : . ..::.
CCDS13 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIP-PPEILNPTASLPML
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 PWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKDSLNHLNLPPL
:: :..: :. . :: :...: .::... . . .:: .. . ::
CCDS13 IWD--SVLA-------PQAQPIAWAS----LRLQE-SPRVAELTSLSDEDS-GKGSQPPS
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 LVLPTRWSPTLGPDRHGAPE-KLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHCH
: :. .:. .. . : :: . :: . : . :: :.. ..
CCDS13 ---P----PSPAPSSFSSTSVSSLEAEAYAAFPGLGQV-----P-KQLAQLSEAKD----
110 120 130 140
180 190 200 210 220 230
pF1KB7 LQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEKP
::. ..:.::::.::: ::::::::::.:::::.: :::::::::::::::::::::::
CCDS13 LQARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKP
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB7 YACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGC--CPGP
..: :::::::::::::::::::::.:::.:. :..:::::::: .:.:::: ::
CCDS13 FSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
210 220 230 240 250 260
>>CCDS6421.1 SCRT1 gene_id:83482|Hs108|chr8 (348 aa)
initn: 743 init1: 528 opt: 581 Z-score: 441.8 bits: 90.0 E(32554): 2.8e-18
Smith-Waterman score: 581; 49.7% identity (68.7% similar) in 163 aa overlap (129-291:168-330)
100 110 120 130 140 150
pF1KB7 RAAIVPLKDSLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCH
: : :: . .. : : : .:
CCDS64 STASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECG
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB7 KPYHTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAF
: : : ..:.::.: : :. . : : : :.:. :. ::. :: : : .:::::
CCDS64 KTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAF
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB7 SRPWLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMS
:::::::::.:.::::::..:.::..:::::::::::.:::: :...:.:: :.:. :
CCDS64 SRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKS
260 270 280 290 300 310
280 290
pF1KB7 LLARHEESGCCPGP
: .: ::.: :
CCDS64 YLNKHYESACFKGGAGGPAAPAPPQLSPVQA
320 330 340
>>CCDS13006.1 SCRT2 gene_id:85508|Hs108|chr20 (307 aa)
initn: 610 init1: 498 opt: 578 Z-score: 440.3 bits: 89.5 E(32554): 3.3e-18
Smith-Waterman score: 589; 39.4% identity (59.3% similar) in 307 aa overlap (1-288:1-291)
10 20 30 40 50
pF1KB7 MPRSFLVKT-------HSSHRVPNYRRLETQREINGACSACG-GLVVP--LLPRDKEAPS
:::::::: :. .:.:. ::: . :: . : . .: : : . .: .
CCDS13 MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 VPG-DL-P-QPWDRSSAVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD
:: .: : .: .: : : : . .:.: . . :.. .: . : .. .:
CCDS13 KPGLELAPAEPAYPPAAPEEYSDPESP--QSSLSARYFRG-EAAVTDSYSMDAFFI--SD
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 SLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAP----GGFE--CFHCHKPY
. .. : : : :. . .. : :: :: . : .: : :
CCDS13 GRSR-----------RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTY
120 130 140 150 160
170 180 190 200 210 220
pF1KB7 HTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRP
: ..:.::.: : :. . : : : :.:. :: ::. ::.: : .::::::::
CCDS13 ATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRP
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB7 WLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLA
::::::.:.::::::..:.::..:::::::::::.:::: :.::::.: :.:. : :
CCDS13 WLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLH
230 240 250 260 270 280
290
pF1KB7 RHEESGCCPGP
.: :..:
CCDS13 KHCEAACAKAAEPPPPTPAGPAS
290 300
>>CCDS42496.1 ZNF846 gene_id:162993|Hs108|chr19 (533 aa)
initn: 2189 init1: 302 opt: 422 Z-score: 324.4 bits: 68.9 E(32554): 9.5e-12
Smith-Waterman score: 422; 42.1% identity (69.3% similar) in 140 aa overlap (152-289:394-530)
130 140 150 160 170 180
pF1KB7 TRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHCHLQVGR
.:: .: : ... . :..: ..: .
CCDS42 KLYLCKACGKAFTRSSGLVLHMRTHTGEKPYECKECGKAFNNSSMLSQHVRIHTGE---K
370 380 390 400 410 420
190 200 210 220 230
pF1KB7 VFTCKYCDKEYTSLGALKMHIRTHT--LPCTCKICGKAFSRPWLLQGHVRTHTGEKPYAC
. :: : : .:. ..:. :.:::: : :: :::::.: :. :.:::::::::::
CCDS42 PYECKECGKAFTQSSGLSTHLRTHTGEKACECKECGKAFARSTNLNMHMRTHTGEKPYAC
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB7 SHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
..:..:: . : .: .::. :: :.:..: :.:.. : ::.: .. :
CCDS42 KECGKAFRYSTYLNVHTRTHTGAKPYECKKCGKNFTQSSALAKHLRTKACEKT
490 500 510 520 530
>>CCDS54214.1 ZNF177 gene_id:7730|Hs108|chr19 (481 aa)
initn: 1005 init1: 307 opt: 407 Z-score: 314.1 bits: 66.8 E(32554): 3.6e-11
Smith-Waterman score: 407; 39.9% identity (61.4% similar) in 153 aa overlap (136-286:268-417)
110 120 130 140 150 160
pF1KB7 KDSLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLA
: .: . : . .:: : : . .
CCDS54 GKISPLSVHTKTGSVEEGLECNEHEKTFTDPLSLQNCVRTHSGEMPYECSDCGKAFIFQS
240 250 260 270 280 290
170 180 190 200 210 220
pF1KB7 GLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHT--LPCTCKICGKAFSRPWL
.: .: . : . . : .: : ... . :..: :::: : :: :::::. :
CCDS54 SLKKHMRSHTGE---KPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFTVPSS
300 310 320 330 340 350
230 240 250 260 270 280
pF1KB7 LQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARH
:: ::::::::::: :: :..:: :.:.:. : ..:. : :.: .: :.:: : : :
CCDS54 LQKHVRTHTGEKPYECSDCGKAFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVH
360 370 380 390 400 410
290
pF1KB7 EESGCCPGP
...
CCDS54 KRTHTGEKTYECKECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEKAFSTSTNLIMHKRIH
420 430 440 450 460 470
>>CCDS12212.1 ZNF177 gene_id:7730|Hs108|chr19 (321 aa)
initn: 1029 init1: 307 opt: 404 Z-score: 314.0 bits: 66.2 E(32554): 3.6e-11
Smith-Waterman score: 404; 42.3% identity (64.2% similar) in 137 aa overlap (152-286:124-257)
130 140 150 160 170 180
pF1KB7 TRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHCHLQVGR
.:: : : . ..: .: . : .
CCDS12 DTIAMQNIPGGKTSNGINTNCVRTHSGEMPYECSDCGKAFIFQSSLKKHMRSHTG---EK
100 110 120 130 140 150
190 200 210 220 230
pF1KB7 VFTCKYCDKEYTSLGALKMHIRTHT--LPCTCKICGKAFSRPWLLQGHVRTHTGEKPYAC
. : .: : ... . :..: :::: : :: :::::. : :: ::::::::::: :
CCDS12 PYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEKPYEC
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 SHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
: :..:: :.:.:. : ..:. : :.: .: :.:: : : :...
CCDS12 SDCGKAFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVHKRTHTGEKTYECKECG
220 230 240 250 260 270
CCDS12 KAFRNSSCLRVHVRTHTGEKPYKCIQCEKAFSTSTNLIMHKRIHNGQKLHE
280 290 300 310 320
>>CCDS35075.1 ZNF782 gene_id:158431|Hs108|chr9 (699 aa)
initn: 2153 init1: 289 opt: 408 Z-score: 312.9 bits: 67.1 E(32554): 4.2e-11
Smith-Waterman score: 413; 40.4% identity (61.5% similar) in 156 aa overlap (139-292:465-617)
110 120 130 140 150 160
pF1KB7 LNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLA
:. .: . ::: .: : . ..::
CCDS35 SGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLR
440 450 460 470 480 490
170 180 190 200 210 220
pF1KB7 RHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHT--LPCTCKICGKAFSRPWLLQG
::. : : . : : : . ..:. : :::: : :. :::::.. :.:
CCDS35 NHRRTHTGE---RPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRG
500 510 520 530 540 550
230 240 250 260 270 280
pF1KB7 HVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEES
: : ::::::: :.::..::...::::.: .::. : :.:..: ::: . : : :...
CCDS35 HHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRT
560 570 580 590 600 610
290
pF1KB7 GCCPGP
:
CCDS35 HTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGE
620 630 640 650 660 670
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:19:18 2016 done: Fri Nov 4 21:19:19 2016
Total Scan time: 2.760 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]