FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7620, 367 aa
  1>>>pF1KB7620 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1864+/-0.000919; mu= -2.9638+/- 0.055
 mean_var=379.7897+/-77.660, 0's: 0 Z-trim(117.7): 43  B-trim: 186 in 1/53
 Lambda= 0.065812
 statistics sampled from 18409 (18450) to 18409 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.567), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS33034.1 DMRTC2 gene_id:63946|Hs108|chr19       ( 367) 2671 266.9   2e-71


>>CCDS33034.1 DMRTC2 gene_id:63946|Hs108|chr19            (367 aa)
 initn: 2671 init1: 2671 opt: 2671  Z-score: 1395.7  bits: 266.9 E(32554): 2e-71
Smith-Waterman score: 2671; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB7 MEPSDMPAGYHCPLDSAPWDETRDPQSTELIPRRAISRSPTCARCRNHGVTAHLKGHKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MEPSDMPAGYHCPLDSAPWDETRDPQSTELIPRRAISRSPTCARCRNHGVTAHLKGHKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CLFQACECHKCVLILERRRVMAAQVALRRQQEAQLKKHLMRRGEASPKAPNHFRKGTTQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLFQACECHKCVLILERRRVMAAQVALRRQQEAQLKKHLMRRGEASPKAPNHFRKGTTQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QVPSGKENIAPQPQTPHGAVLLAPTPPGKNSCGPLLLSHPPEASPLSWTPVPPGPWVPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QVPSGKENIAPQPQTPHGAVLLAPTPPGKNSCGPLLLSHPPEASPLSWTPVPPGPWVPGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 WLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSLQLPTHGPFTTCPGSHPVLTAPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSLQLPTHGPFTTCPGSHPVLTAPLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLARTSGPSEWQLQQEAAEALVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLARTSGPSEWQLQQEAAEALVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVGPCLRPSPAPSVALHIGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVGPCLRPSPAPSVALHIGRL
              310       320       330       340       350       360

              
pF1KB7 GSISLLS
       :::::::
CCDS33 GSISLLS
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:59:34 2016 done: Fri Nov  4 08:59:35 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]