FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7621, 313 aa
  1>>>pF1KB7621 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3205+/-0.000923; mu= -1.9933+/- 0.057
 mean_var=413.1887+/-84.091, 0's: 0 Z-trim(118.3): 111  B-trim: 61 in 1/55
 Lambda= 0.063096
 statistics sampled from 19169 (19284) to 19169 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.592), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS9328.1 CDX2 gene_id:1045|Hs108|chr13           ( 313) 2183 211.7 6.1e-55
CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5            ( 265)  584 66.0 3.6e-11


>>CCDS9328.1 CDX2 gene_id:1045|Hs108|chr13                (313 aa)
 initn: 2183 init1: 2183 opt: 2183  Z-score: 1099.8  bits: 211.7 E(32554): 6.1e-55
Smith-Waterman score: 2183; 99.7% identity (99.7% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS93 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVL
              250       260       270       280       290       300

              310   
pF1KB7 GPTGGVLNPTVTQ
       :::::::::::::
CCDS93 GPTGGVLNPTVTQ
              310   

>>CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5                 (265 aa)
 initn: 549 init1: 485 opt: 584  Z-score: 314.0  bits: 66.0 E(32554): 3.6e-11
Smith-Waterman score: 744; 49.3% identity (64.9% similar) in 282 aa overlap (1-274:1-238)

               10        20        30              40        50    
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
       :::.:.::::  .::. .: .. :.:.:: .       .::::::...:         ..
CCDS43 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
               10        20         30        40                 50

           60        70         80        90       100       110   
pF1KB7 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
CCDS43 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
               60         70        80                   90        

           120       130       140       150       160       170   
pF1KB7 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-
        :   :      :. .:    :::     ::  :.        :::.:: .  ::::.  
CCDS43 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV
      100                 110       120               130       140

            180       190       200       210       220       230  
pF1KB7 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
       :  . :.. :::::::::::::::::::::::::::::::::::.::::.:::.::::::
CCDS43 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI
              150       160       170       180       190       200

            240       250       260       270       280       290  
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
       :::::::::::.::::   ::::::::::        :  ::                  
CCDS43 WFQNRRAKERKVNKKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCPSNTSLLATSSP
              210          220       230        240       250      

            300       310   
pF1KB7 SGSVPGVLGPTGGVLNPTVTQ
                            
CCDS43 MPVKEEFLP            
        260                 




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:00:11 2016 done: Fri Nov  4 09:00:11 2016
 Total Scan time:  2.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]