FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7625, 316 aa
  1>>>pF1KB7625 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8754+/-0.000965; mu= 12.6479+/- 0.058
 mean_var=69.0093+/-13.768, 0's: 0 Z-trim(104.7): 13  B-trim: 0 in 0/51
 Lambda= 0.154390
 statistics sampled from 8018 (8021) to 8018 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.246), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS13135.1 POLR3F gene_id:10621|Hs108|chr20       ( 316) 2095 475.7  2e-134


>>CCDS13135.1 POLR3F gene_id:10621|Hs108|chr20            (316 aa)
 initn: 2095 init1: 2095 opt: 2095  Z-score: 2526.9  bits: 475.7 E(32554): 2e-134
Smith-Waterman score: 2095; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB7 MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGG
              250       260       270       280       290       300

              310      
pF1KB7 EISPSNCIYMTEWLEF
       ::::::::::::::::
CCDS13 EISPSNCIYMTEWLEF
              310      




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:02:11 2016 done: Fri Nov  4 09:02:12 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]