Result of FASTA (ccds) for
pF1KB7627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7627, 297 aa
1>>>pF1KB7627 297 - 297 aa - 297 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8029+/-0.000811; mu= 14.3085+/- 0.049
mean_var=107.2454+/-20.934, 0's: 0 Z-trim(111.4): 57 B-trim: 57 in 2/50
Lambda= 0.123847
statistics sampled from 12287 (12340) to 12287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.379), width: 16
Scan time: 2.650
The best scores are: opt bits E(32554)
CCDS14386.1 EDA2R gene_id:60401|Hs108|chrX ( 297) 2087 383.1 1.4e-106
CCDS56603.1 EDA2R gene_id:60401|Hs108|chrX ( 318) 1283 239.5 2.5e-63
CCDS9301.1 TNFRSF19 gene_id:55504|Hs108|chr13 ( 417) 661 128.4 8.7e-30
CCDS9302.1 TNFRSF19 gene_id:55504|Hs108|chr13 ( 423) 661 128.4 8.8e-30
>>CCDS14386.1 EDA2R gene_id:60401|Hs108|chrX (297 aa)
initn: 2087 init1: 2087 opt: 2087 Z-score: 2027.1 bits: 383.1 E(32554): 1.4e-106
Smith-Waterman score: 2087; 99.3% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS14 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
250 260 270 280 290
>>CCDS56603.1 EDA2R gene_id:60401|Hs108|chrX (318 aa)
initn: 2073 init1: 1260 opt: 1283 Z-score: 1250.4 bits: 239.5 E(32554): 2.5e-63
Smith-Waterman score: 2035; 92.8% identity (93.4% similar) in 318 aa overlap (1-297:1-318)
10 20 30 40 50 60
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHKCQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS56 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQR--------
::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS56 QLSLVEADTPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSD
130 140 150 160 170 180
180 190 200 210
pF1KB7 -------------GGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PVPASLNLIPEFAGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTV
250 260 270 280 290 300
280 290
pF1KB7 ESTGDRLELNVPFEVPSP
::::::::::::::::::
CCDS56 ESTGDRLELNVPFEVPSP
310
>>CCDS9301.1 TNFRSF19 gene_id:55504|Hs108|chr13 (417 aa)
initn: 691 init1: 648 opt: 661 Z-score: 648.2 bits: 128.4 E(32554): 8.7e-30
Smith-Waterman score: 661; 42.4% identity (69.4% similar) in 229 aa overlap (2-223:33-261)
10 20 30
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDC
::...:. :. : :: :..::::.::::.:
CCDS93 LKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKEC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GYGEGGDAYCTACPPRRYKSSWGHHKCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFY
:.: : :: :..: .:.: .:: .::. :. :::.:: ::.::.:::.:.:::::: ::
CCDS93 GFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 RKTRIGGLQDQECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFT
:::.. :.::.::.:: : : .:: ...::. . . :....:.:.. : :..
CCDS93 RKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALATVL
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 LAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETS--AESQVSENIF
::.: : .:::. : .. .: . . . ...: : : : .: . : : ..
CCDS93 LALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRDSV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 QT-QP--LNPIL--EDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSS
:: : : : . :. ::
CCDS93 QTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSICG
250 260 270 280 290 300
>>CCDS9302.1 TNFRSF19 gene_id:55504|Hs108|chr13 (423 aa)
initn: 691 init1: 648 opt: 661 Z-score: 648.1 bits: 128.4 E(32554): 8.8e-30
Smith-Waterman score: 661; 42.4% identity (69.4% similar) in 229 aa overlap (2-223:33-261)
10 20 30
pF1KB7 MDCQENEYWDQWGRCVTCQRCGPGQELSKDC
::...:. :. : :: :..::::.::::.:
CCDS93 LKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKEC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GYGEGGDAYCTACPPRRYKSSWGHHKCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFY
:.: : :: :..: .:.: .:: .::. :. :::.:: ::.::.:::.:.:::::: ::
CCDS93 GFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 RKTRIGGLQDQECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFT
:::.. :.::.::.:: : : .:: ...::. . . :....:.:.. : :..
CCDS93 RKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALATVL
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 LAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETS--AESQVSENIF
::.: : .:::. : .. .: . . . ...: : : : .: . : : ..
CCDS93 LALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRDSV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 QT-QP--LNPIL--EDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSS
:: : : : . :. ::
CCDS93 QTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSICG
250 260 270 280 290 300
297 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:28:19 2016 done: Sat Nov 5 18:28:20 2016
Total Scan time: 2.650 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]