FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7632, 364 aa
  1>>>pF1KB7632 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8641+/-0.000693; mu= 7.8269+/- 0.042
 mean_var=175.2345+/-34.467, 0's: 0 Z-trim(116.5): 3  B-trim: 0 in 0/52
 Lambda= 0.096887
 statistics sampled from 17115 (17118) to 17115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.526), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS989.1 VPS72 gene_id:6944|Hs108|chr1            ( 364) 2459 354.9 6.2e-98
CCDS59201.1 VPS72 gene_id:6944|Hs108|chr1          ( 375) 1557 228.8 5.7e-60


>>CCDS989.1 VPS72 gene_id:6944|Hs108|chr1                 (364 aa)
 initn: 2459 init1: 2459 opt: 2459  Z-score: 1871.7  bits: 354.9 E(32554): 6.2e-98
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KB7 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 YRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQK
              310       320       330       340       350       360

           
pF1KB7 IVIK
       ::::
CCDS98 IVIK
           

>>CCDS59201.1 VPS72 gene_id:6944|Hs108|chr1               (375 aa)
 initn: 2445 init1: 1555 opt: 1557  Z-score: 1190.1  bits: 228.8 E(32554): 5.7e-60
Smith-Waterman score: 2427; 97.1% identity (97.1% similar) in 375 aa overlap (1-364:1-375)

               10        20        30        40        50        60
pF1KB7 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KB7 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEG----
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS59 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSLCF
              190       200       210       220       230       240

               240       250       260       270       280         
pF1KB7 -------LDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVR
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVR
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KB7 EVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPL
              310       320       330       340       350       360

     350       360    
pF1KB7 PGSGPRALRQKIVIK
       :::::::::::::::
CCDS59 PGSGPRALRQKIVIK
              370     




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:04:54 2016 done: Fri Nov  4 09:04:54 2016
 Total Scan time:  3.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]