Result of FASTA (omim) for
pF1KB7632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7632, 364 aa
1>>>pF1KB7632 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6548+/-0.000293; mu= 2.9418+/- 0.018
mean_var=189.4541+/-36.794, 0's: 0 Z-trim(124.1): 4 B-trim: 0 in 0/57
Lambda= 0.093180
statistics sampled from 45038 (45043) to 45038 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.528), width: 16
Scan time: 8.950
The best scores are: opt bits E(85289)
NP_005988 (OMIM: 600607) vacuolar protein sorting- ( 364) 2459 342.1 1.2e-93
NP_001258016 (OMIM: 600607) vacuolar protein sorti ( 375) 1557 220.8 3.9e-57
NP_001258017 (OMIM: 600607) vacuolar protein sorti ( 199) 1246 178.8 9e-45
XP_016857694 (OMIM: 600607) PREDICTED: vacuolar pr ( 243) 904 132.9 7.3e-31
>>NP_005988 (OMIM: 600607) vacuolar protein sorting-asso (364 aa)
initn: 2459 init1: 2459 opt: 2459 Z-score: 1802.3 bits: 342.1 E(85289): 1.2e-93
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KB7 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQK
310 320 330 340 350 360
pF1KB7 IVIK
::::
NP_005 IVIK
>>NP_001258016 (OMIM: 600607) vacuolar protein sorting-a (375 aa)
initn: 2445 init1: 1555 opt: 1557 Z-score: 1146.8 bits: 220.8 E(85289): 3.9e-57
Smith-Waterman score: 2427; 97.1% identity (97.1% similar) in 375 aa overlap (1-364:1-375)
10 20 30 40 50 60
pF1KB7 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEG----
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSLCF
190 200 210 220 230 240
240 250 260 270 280
pF1KB7 -------LDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVR
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 EVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPL
310 320 330 340 350 360
350 360
pF1KB7 PGSGPRALRQKIVIK
:::::::::::::::
NP_001 PGSGPRALRQKIVIK
370
>>NP_001258017 (OMIM: 600607) vacuolar protein sorting-a (199 aa)
initn: 1246 init1: 1246 opt: 1246 Z-score: 924.8 bits: 178.8 E(85289): 9e-45
Smith-Waterman score: 1246; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB7 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPA
:::::::::::
NP_001 ELNLRSLETYEAAPKSPCS
190
>>XP_016857694 (OMIM: 600607) PREDICTED: vacuolar protei (243 aa)
initn: 1582 init1: 904 opt: 904 Z-score: 675.1 bits: 132.9 E(85289): 7.3e-31
Smith-Waterman score: 1564; 95.5% identity (95.5% similar) in 243 aa overlap (133-364:1-243)
110 120 130 140 150 160
pF1KB7 TPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPH
::::::::::::::::::::::::::::::
XP_016 MRQSTAEHTRQTFLRVQERQGQSRRRKGPH
10 20 30
170 180 190 200 210 220
pF1KB7 CERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLV
40 50 60 70 80 90
230 240 250 260 270
pF1KB7 GEPGPKEENVDIEG-----------LDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDD
:::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 GEPGPKEENVDIEGSLCFSLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDD
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB7 ATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHG
160 170 180 190 200 210
340 350 360
pF1KB7 LPPTASALGPGPPPPEPLPGSGPRALRQKIVIK
:::::::::::::::::::::::::::::::::
XP_016 LPPTASALGPGPPPPEPLPGSGPRALRQKIVIK
220 230 240
364 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:04:55 2016 done: Fri Nov 4 09:04:56 2016
Total Scan time: 8.950 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]