FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7641, 326 aa
  1>>>pF1KB7641 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3201+/-0.000952; mu= -3.9104+/- 0.056
 mean_var=485.9625+/-116.783, 0's: 0 Z-trim(117.6): 355  B-trim: 893 in 1/52
 Lambda= 0.058180
 statistics sampled from 17744 (18329) to 17744 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.563), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS59426.1 ZNF444 gene_id:55311|Hs108|chr19       ( 326) 2369 212.5 3.7e-55
CCDS12939.1 ZNF444 gene_id:55311|Hs108|chr19       ( 327) 2357 211.5 7.4e-55


>>CCDS59426.1 ZNF444 gene_id:55311|Hs108|chr19            (326 aa)
 initn: 2369 init1: 2369 opt: 2369  Z-score: 1103.8  bits: 212.5 E(32554): 3.7e-55
Smith-Waterman score: 2369; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KB7 MEVAVPVKQEAEGLALDSPWHRFRRFHLGDAPGPREALGLLRALCRDWLRPEVHTKEQML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEVAVPVKQEAEGLALDSPWHRFRRFHLGDAPGPREALGLLRALCRDWLRPEVHTKEQML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELLVLEQFLSALPADTQAWVCSRQPQSGEEAVALLEELWGPAASPDGSSATRVPQDVTQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ELLVLEQFLSALPADTQAWVCSRQPQSGEEAVALLEELWGPAASPDGSSATRVPQDVTQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PGATGGKEDSGMIPLGTAPGAEGPAPGDSQAVRPYKQEPSSPPLAPGLPAFLAAPGTTSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PGATGGKEDSGMIPLGTAPGAEGPAPGDSQAVRPYKQEPSSPPLAPGLPAFLAAPGTTSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PECGKTSLKPAHLLRHRQSHSGEKPHACPECGKAFRRKEHLRRHRDTHPGSPGSPGPALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PECGKTSLKPAHLLRHRQSHSGEKPHACPECGKAFRRKEHLRRHRDTHPGSPGSPGPALR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIHG
              250       260       270       280       290       300

              310       320      
pF1KB7 RAAASAQGAVAPGPDGGGPFPPWPLG
       ::::::::::::::::::::::::::
CCDS59 RAAASAQGAVAPGPDGGGPFPPWPLG
              310       320      

>>CCDS12939.1 ZNF444 gene_id:55311|Hs108|chr19            (327 aa)
 initn: 2355 init1: 1441 opt: 2357  Z-score: 1098.3  bits: 211.5 E(32554): 7.4e-55
Smith-Waterman score: 2357; 99.7% identity (99.7% similar) in 327 aa overlap (1-326:1-327)

               10        20        30        40        50        60
pF1KB7 MEVAVPVKQEAEGLALDSPWHRFRRFHLGDAPGPREALGLLRALCRDWLRPEVHTKEQML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEVAVPVKQEAEGLALDSPWHRFRRFHLGDAPGPREALGLLRALCRDWLRPEVHTKEQML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELLVLEQFLSALPADTQAWVCSRQPQSGEEAVALLEELWGPAASPDGSSATRVPQDVTQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELLVLEQFLSALPADTQAWVCSRQPQSGEEAVALLEELWGPAASPDGSSATRVPQDVTQG
               70        80        90       100       110       120

              130        140       150       160       170         
pF1KB7 PGATGGKEDSGMIPL-GTAPGAEGPAPGDSQAVRPYKQEPSSPPLAPGLPAFLAAPGTTS
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGATGGKEDSGMIPLAGTAPGAEGPAPGDSQAVRPYKQEPSSPPLAPGLPAFLAAPGTTS
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB7 CPECGKTSLKPAHLLRHRQSHSGEKPHACPECGKAFRRKEHLRRHRDTHPGSPGSPGPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CPECGKTSLKPAHLLRHRQSHSGEKPHACPECGKAFRRKEHLRRHRDTHPGSPGSPGPAL
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB7 RPLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPLPAREKPHACCECGKTFYWREHLVRHRKTHSGARPFACWECGKGFGRREHVLRHQRIH
              250       260       270       280       290       300

     300       310       320      
pF1KB7 GRAAASAQGAVAPGPDGGGPFPPWPLG
       :::::::::::::::::::::::::::
CCDS12 GRAAASAQGAVAPGPDGGGPFPPWPLG
              310       320       




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:02:28 2016 done: Sat Nov  5 10:02:28 2016
 Total Scan time:  3.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]