Result of FASTA (omim) for
pF1KB7644
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7644, 390 aa
1>>>pF1KB7644 390 - 390 aa - 390 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9324+/-0.000427; mu= 16.9064+/- 0.027
mean_var=199.8425+/-42.137, 0's: 0 Z-trim(117.9): 423 B-trim: 1100 in 1/55
Lambda= 0.090726
statistics sampled from 29763 (30308) to 29763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.355), width: 16
Scan time: 9.210
The best scores are: opt bits E(85289)
NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 2696 365.6 1.2e-100
XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 2252 307.3 3.3e-83
XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/ ( 329) 2252 307.3 3.3e-83
XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 2097 287.0 4.1e-77
XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/ ( 315) 2097 287.0 4.1e-77
XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 1736 239.9 7.6e-63
XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 1733 239.5 1e-62
NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 1718 237.6 4e-62
NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 1718 237.6 4e-62
NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 608 92.3 2.2e-18
NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 555 85.4 2.7e-16
NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 480 75.5 2.4e-13
NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 470 74.2 6e-13
NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 466 73.7 8.4e-13
NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 466 73.7 8.4e-13
NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 454 72.1 2.6e-12
XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 451 71.7 3.3e-12
NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 451 71.7 3.3e-12
NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 451 71.7 3.4e-12
XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 451 71.7 3.4e-12
XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 446 70.6 3.6e-12
XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 448 71.1 3.6e-12
NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 440 69.7 5.5e-12
NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 440 69.7 5.5e-12
XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 442 70.4 6.9e-12
NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 442 70.5 7e-12
NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 442 70.5 7.2e-12
XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 442 70.5 7.2e-12
XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 442 70.5 7.2e-12
XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 441 70.3 7.3e-12
XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 433 68.7 1e-11
XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 433 68.7 1e-11
NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 431 68.5 1.3e-11
NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 435 69.6 1.4e-11
XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 435 69.8 1.7e-11
XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 427 68.0 1.8e-11
NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 427 68.0 1.8e-11
NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 431 69.0 1.9e-11
NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 426 67.8 2e-11
NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 424 67.5 2.3e-11
XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 424 67.5 2.3e-11
XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 424 67.5 2.3e-11
NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 424 67.5 2.3e-11
XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 424 67.5 2.3e-11
XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 424 67.5 2.3e-11
NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 424 67.5 2.3e-11
NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 424 67.5 2.3e-11
NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 428 68.7 2.6e-11
NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 428 68.7 2.6e-11
NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 428 68.7 2.6e-11
>>NP_203129 (OMIM: 262700,602146) LIM/homeobox protein L (390 aa)
initn: 2696 init1: 2696 opt: 2696 Z-score: 1928.2 bits: 365.6 E(85289): 1.2e-100
Smith-Waterman score: 2696; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)
10 20 30 40 50 60
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 QMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 NRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 EKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 DLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAGGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_203 DLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAGGPT
310 320 330 340 350 360
370 380 390
pF1KB7 SDISTGSSVGYPDFPTSPGSWLDEMDHPPF
::::::::::::::::::::::::::::::
NP_203 SDISTGSSVGYPDFPTSPGSWLDEMDHPPF
370 380 390
>>XP_011508408 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa)
initn: 2252 init1: 2252 opt: 2252 Z-score: 1614.8 bits: 307.3 E(85289): 3.3e-83
Smith-Waterman score: 2252; 100.0% identity (100.0% similar) in 329 aa overlap (62-390:1-329)
40 50 60 70 80 90
pF1KB7 GCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTA
::::::::::::::::::::::::::::::
XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTA
10 20 30
100 110 120 130 140 150
pF1KB7 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB7 EKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTN
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB7 RIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLD
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB7 YTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
280 290 300 310 320
>>XP_011508407 (OMIM: 262700,602146) PREDICTED: LIM/home (329 aa)
initn: 2252 init1: 2252 opt: 2252 Z-score: 1614.8 bits: 307.3 E(85289): 3.3e-83
Smith-Waterman score: 2252; 100.0% identity (100.0% similar) in 329 aa overlap (62-390:1-329)
40 50 60 70 80 90
pF1KB7 GCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTA
::::::::::::::::::::::::::::::
XP_011 MQLADRCFSRAGSVYCKEDFFKRFGTKCTA
10 20 30
100 110 120 130 140 150
pF1KB7 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB7 EKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTN
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB7 RIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLD
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB7 YTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
280 290 300 310 320
>>XP_011508410 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa)
initn: 2097 init1: 2097 opt: 2097 Z-score: 1505.4 bits: 287.0 E(85289): 4.1e-77
Smith-Waterman score: 2097; 99.7% identity (100.0% similar) in 308 aa overlap (83-390:8-315)
60 70 80 90 100 110
pF1KB7 SCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHL
.:::::::::::::::::::::::::::::
XP_011 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL
10 20 30
120 130 140 150 160 170
pF1KB7 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB7 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB7 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSM
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB7 DGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTL
220 230 240 250 260 270
360 370 380 390
pF1KB7 RAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
::::::::::::::::::::::::::::::::::::::
XP_011 RAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
280 290 300 310
>>XP_016858244 (OMIM: 262700,602146) PREDICTED: LIM/home (315 aa)
initn: 2097 init1: 2097 opt: 2097 Z-score: 1505.4 bits: 287.0 E(85289): 4.1e-77
Smith-Waterman score: 2097; 99.7% identity (100.0% similar) in 308 aa overlap (83-390:8-315)
60 70 80 90 100 110
pF1KB7 SCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHL
.:::::::::::::::::::::::::::::
XP_016 MEAERTRRRFGTKCTACQQGIPPTQVVRKAQDFVYHL
10 20 30
120 130 140 150 160 170
pF1KB7 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB7 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB7 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSM
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB7 DGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTL
220 230 240 250 260 270
360 370 380 390
pF1KB7 RAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
::::::::::::::::::::::::::::::::::::::
XP_016 RAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
280 290 300 310
>>XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/home (373 aa)
initn: 1184 init1: 808 opt: 1736 Z-score: 1249.3 bits: 239.9 E(85289): 7.6e-63
Smith-Waterman score: 1736; 66.9% identity (85.4% similar) in 378 aa overlap (24-390:1-373)
10 20 30 40 50 60
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
::::: ::::.:::::.::::.:::::::.::::.::
XP_016 MQQIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDC
10 20 30
70 80 90 100 110 120
pF1KB7 QMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIIC
. ::.:::::. :::::.::::::::::.::: :::::::::.:::::::::::::..:
XP_016 HTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVC
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 NRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSP
.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::.::..::
XP_016 KRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKSAYNTSP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQ
:::::::::::::::::::::::::::::::::::::::::.::::.....:::::.::.
XP_016 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKS
160 170 180 190 200 210
250 260 270 280 290
pF1KB7 EKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNGSFSMDG
.:.: : ::.:.:: .. :.:.: .: .::..:. : .: : :.::..
XP_016 DKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--GNFSLEH
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB7 TG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQ
: ..:..:: :::::.: ::.. .:::. :::..: : :..::.. .. :
XP_016 GGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSGAPGGPP
280 290 300 310 320 330
360 370 380 390
pF1KB7 TLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
.:..:: ::.::.::::: ::::::.::.:::::.:: :
XP_016 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
340 350 360 370
>>XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/home (386 aa)
initn: 1181 init1: 805 opt: 1733 Z-score: 1247.0 bits: 239.5 E(85289): 1e-62
Smith-Waterman score: 1733; 66.1% identity (85.0% similar) in 381 aa overlap (21-390:11-386)
10 20 30 40 50 60
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
:.: .:: ::::.:::::.::::.:::::::.::::.::
XP_005 MTLNMKETRWGAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDC
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 QMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIIC
. ::.:::::. :::::.::::::::::.::: :::::::::.:::::::::::::..:
XP_005 HTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 NRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSP
.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::.::..::
XP_005 KRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKSAYNTSP
120 130 140 150 160
190 200 210 220 230 240
pF1KB7 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQ
:::::::::::::::::::::::::::::::::::::::::.::::.....:::::.::.
XP_005 KPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKS
170 180 190 200 210 220
250 260 270 280 290
pF1KB7 EKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNGSFSMDG
.:.: : ::.:.:: .. :.:.: .: .::..:. : .: : :.::..
XP_005 DKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--GNFSLEH
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 TG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQ
: ..:..:: :::::.: ::.. .:::. :::..: : :..::.. .. :
XP_005 GGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSGAPGGPP
290 300 310 320 330 340
360 370 380 390
pF1KB7 TLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
.:..:: ::.::.::::: ::::::.::.:::::.:: :
XP_005 PMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
350 360 370 380
>>NP_835258 (OMIM: 221750,600577) LIM/homeobox protein L (397 aa)
initn: 1166 init1: 790 opt: 1718 Z-score: 1236.3 bits: 237.6 E(85289): 4e-62
Smith-Waterman score: 1718; 66.3% identity (85.4% similar) in 377 aa overlap (25-390:26-397)
10 20 30 40 50
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCAD
..:: ::::.:::::.::::.:::::::.::::.:
NP_835 MLLETGLERDRARPGAAAVCTLGGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 CQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACII
:. ::.:::::. :::::.::::::::::.::: :::::::::.:::::::::::::..
NP_835 CHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 CNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNS
:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::.::..:
NP_835 CKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKSAYNTS
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSK
::::::::::::::::::::::::::::::::::::::::::.::::.....:::::.::
NP_835 PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 QEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNGSFSMD
..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : :.::..
NP_835 SDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--GNFSLE
240 250 260 270 280 290
300 310 320 330 340
pF1KB7 GTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVS
: ..:..:: :::::.: ::.. .:::. :::..: : :..::.. .. :
NP_835 HGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSGAPGGP
300 310 320 330 340 350
350 360 370 380 390
pF1KB7 QTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
.:..:: ::.::.::::: ::::::.::.:::::.:: :
NP_835 PPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
360 370 380 390
>>NP_055379 (OMIM: 221750,600577) LIM/homeobox protein L (402 aa)
initn: 1166 init1: 790 opt: 1718 Z-score: 1236.2 bits: 237.6 E(85289): 4e-62
Smith-Waterman score: 1718; 66.3% identity (85.4% similar) in 377 aa overlap (25-390:31-402)
10 20 30 40 50
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSC
..:: ::::.:::::.::::.:::::::.:
NP_055 MEARGELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 LKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHC
:::.::. ::.:::::. :::::.::::::::::.::: :::::::::.::::::::::
NP_055 LKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 FACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKN
:::..:.::::::::::::::.::::: ::::::: . .:: :::::::::::::::::.
NP_055 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-AEATAKRPRTTITAKQLETLKS
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 AYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRS
::..:::::::::::::::::::::::::::::::::::::::::::.::::.....:::
NP_055 AYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRS
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 RGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVT------GGQLMNG
::.::..:.: : ::.:.:: .. :.:.: .: .::..:. : .: : :
NP_055 RGGSKSDKDSVQEGQD-SDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGAL--G
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 SFSMDGTG----QSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHA
.::.. : ..:..:: :::::.: ::.. .:::. :::..: : :..::.. .
NP_055 NFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYP-DTSLGLVPSG
300 310 320 330 340 350
350 360 370 380 390
pF1KB7 GQGVSQTLRAMAG-GPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF
. : .:..:: ::.::.::::: ::::::.::.:::::.:: :
NP_055 APGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
360 370 380 390 400
>>NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 [Ho (402 aa)
initn: 891 init1: 565 opt: 608 Z-score: 451.0 bits: 92.3 E(85289): 2.2e-18
Smith-Waterman score: 831; 37.9% identity (60.5% similar) in 420 aa overlap (29-388:4-392)
10 20 30 40 50 60
pF1KB7 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
.::::.. :::.:.:.:::: :: .:..: .:
NP_071 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCEC
10 20 30
70 80 90 100 110 120
pF1KB7 QMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIIC
. .:...:::: :..:::.:::.::::::..: ::: :...::::.. :.::.::.:..:
NP_071 KTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVC
40 50 60 70 80 90
130 140
pF1KB7 NRQLATGDEFYLMEDGRLVCKEDY------------------------------------
:.::.::.:.:.......:::.::
NP_071 NKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKE
100 110 120 130 140 150
150 160 170 180 190
pF1KB7 ---------ETAK-QNDDSEAGAKR--PRTTITAKQLETLKNAYKNSPKPARHVREQLSS
:::. .:.....:.:: ::::: :::::::: :. .:::.::.::::..
NP_071 TDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQ
160 170 180 190 200 210
200 210 220 230 240 250
pF1KB7 ETGLDMRVVQVWFQNRRAKEKRLKK-DAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGV
::::.:::.::::::::.::.:.:. .: : :..: .: : . . .
NP_071 ETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGR----------L
220 230 240 250 260
260 270 280 290 300
pF1KB7 SDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGS---FSMDGTGQSYQDLRDGSPY
..::. :: : : :: : :: : : .. :. :.: .
NP_071 DESEM----------LGSTPYTY--YGDYQGDYYAPGSNYDFFAHGPPSQAQSPADSS-F
270 280 290 300 310
310 320 330 340 350 360
pF1KB7 GIPQSPSSISSLPSHAPLLNGLDYTVDSN--LGIIAHAGQ-----GVSQTLRAMAGGPTS
..:.: . : . : : : ...:. .:.: :. ::. : :
NP_071 LAASGPGS-TPLGALEPPLAG-PHAADNPRFTDMISHPDTPSPEPGLPGTLHPM---PGE
320 330 340 350 360
370 380 390
pF1KB7 DISTGSSVGYPDFPTSPGS-WLDEMDHPPF
.: : : : :: : : . ..::
NP_071 VFSGGPS---PPFPMSGTSGYSGPLSHPNPELNEAAVW
370 380 390 400
390 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:58:31 2016 done: Sat Nov 5 07:58:33 2016
Total Scan time: 9.210 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]