FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7653, 334 aa
  1>>>pF1KB7653 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7094+/-0.00104; mu= 4.8893+/- 0.062
 mean_var=141.2165+/-28.061, 0's: 0 Z-trim(107.9): 20  B-trim: 68 in 1/50
 Lambda= 0.107927
 statistics sampled from 9839 (9842) to 9839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS13697.1 HSF2BP gene_id:11077|Hs108|chr21       ( 334) 2126 342.6 2.6e-94


>>CCDS13697.1 HSF2BP gene_id:11077|Hs108|chr21            (334 aa)
 initn: 2126 init1: 2126 opt: 2126  Z-score: 1806.6  bits: 342.6 E(32554): 2.6e-94
Smith-Waterman score: 2126; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KB7 MGEAGAAEEACRHMGTKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGEVLESFQKLKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGEAGAAEEACRHMGTKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGEVLESFQKLKIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EKNLERKEQELEQLKMDCEHFKARLETVQADNIREKKEKLALRQQLNEAKQQLLQQAEYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKNLERKEQELEQLKMDCEHFKARLETVQADNIREKKEKLALRQQLNEAKQQLLQQAEYC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TEMGAAACTLLWGVSSSEEVVKAILGGDKALKFFSITGQTMESFVKSLDGDVQELDSDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TEMGAAACTLLWGVSSSEEVVKAILGGDKALKFFSITGQTMESFVKSLDGDVQELDSDES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QFVFALAGIVTNVAAIACGREFLVNSSRVLLDTILQLLGDLKPGQCTKLKVLMLMSLYNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QFVFALAGIVTNVAAIACGREFLVNSSRVLLDTILQLLGDLKPGQCTKLKVLMLMSLYNV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SINLKGLKYISESPGFIPLLWWLLSDPDAEVCLHVLRLVQSVVLEPEVFSKSASEFRSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SINLKGLKYISESPGFIPLLWWLLSDPDAEVCLHVLRLVQSVVLEPEVFSKSASEFRSSL
              250       260       270       280       290       300

              310       320       330    
pF1KB7 PLQRILAMSKSRNPRLQTAAQELLEDLRTLEHNV
       ::::::::::::::::::::::::::::::::::
CCDS13 PLQRILAMSKSRNPRLQTAAQELLEDLRTLEHNV
              310       320       330    




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:25:57 2016 done: Fri Nov  4 21:25:57 2016
 Total Scan time:  2.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]