FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7660, 395 aa
  1>>>pF1KB7660 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7100+/-0.000931; mu= -3.6463+/- 0.057
 mean_var=378.6177+/-76.751, 0's: 0 Z-trim(118.0): 16  B-trim: 187 in 1/53
 Lambda= 0.065913
 statistics sampled from 18802 (18818) to 18802 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.578), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(32554)
CCDS5695.1 TSC22D4 gene_id:81628|Hs108|chr7        ( 395) 2691 269.0 5.3e-72


>>CCDS5695.1 TSC22D4 gene_id:81628|Hs108|chr7             (395 aa)
 initn: 2691 init1: 2691 opt: 2691  Z-score: 1406.2  bits: 269.0 E(32554): 5.3e-72
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB7 MSGGKKKSSFQITSVTTDYEGPGSPGASDPPTPQPPTGPPPRLPNGEPSPDPGGKGTPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSGGKKKSSFQITSVTTDYEGPGSPGASDPPTPQPPTGPPPRLPNGEPSPDPGGKGTPRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSPPPGAPSSRFRVVKLPHGLGEPYRRGRWTCVDVYERDLEPHSFGGLLEGIRGASGGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GSPPPGAPSSRFRVVKLPHGLGEPYRRGRWTCVDVYERDLEPHSFGGLLEGIRGASGGAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GRSLDSRLELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLVVPSKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GRSLDSRLELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLVVPSKAK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSLRVEAEAGGSGARTPPLSRRKAVDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSLRVEAEAGGSGARTPPLSRRKAVDM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 RLRMELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHKSPDPFGAVAAQKFSLAHSMLAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RLRMELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHKSPDPFGAVAAQKFSLAHSMLAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRELAERNAALEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRELAERNAALEQ
              310       320       330       340       350       360

              370       380       390     
pF1KB7 ENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV
       :::::::::::::::::::::::::::::::::::
CCDS56 ENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV
              370       380       390     




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:26:33 2016 done: Fri Nov  4 21:26:33 2016
 Total Scan time:  3.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]