Result of FASTA (ccds) for
pF1KB7676
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7676, 406 aa
1>>>pF1KB7676 406 - 406 aa - 406 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7646+/-0.000962; mu= 13.3647+/- 0.059
mean_var=210.4971+/-47.008, 0's: 0 Z-trim(111.9): 166 B-trim: 446 in 1/51
Lambda= 0.088400
statistics sampled from 12531 (12726) to 12531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.391), width: 16
Scan time: 3.080
The best scores are: opt bits E(32554)
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 2741 362.2 5e-100
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 1029 143.8 2.6e-34
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 1029 143.9 2.6e-34
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 461 71.4 1.6e-12
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 461 71.4 1.7e-12
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 459 71.2 2e-12
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 443 69.0 7.6e-12
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 442 69.0 9e-12
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 430 66.9 1.5e-11
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 430 66.9 1.5e-11
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 430 66.9 1.5e-11
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 433 67.9 2e-11
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 425 66.2 2.2e-11
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 425 66.3 2.3e-11
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 417 65.3 4.8e-11
>>CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 (406 aa)
initn: 2741 init1: 2741 opt: 2741 Z-score: 1909.3 bits: 362.2 E(32554): 5e-100
Smith-Waterman score: 2741; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KB7 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSP
310 320 330 340 350 360
370 380 390 400
pF1KB7 SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
370 380 390 400
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 1824 init1: 930 opt: 1029 Z-score: 729.6 bits: 143.8 E(32554): 2.6e-34
Smith-Waterman score: 1891; 70.3% identity (85.5% similar) in 407 aa overlap (1-406:11-388)
10 20 30 40 50
pF1KB7 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRA
::::..:: ...:...::.::.:.:: ..: : .. :: .: ..
CCDS30 MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAGMPPLSPEKP
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 ALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRF
::::::::::::::::::::::::.:::::::::: ::::::::.:::::::::::::::
CCDS30 ALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE
::::::::::::::::::::::: ::::.::::.:::: ::::::::::::::::: :::
CCDS30 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 ALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKS
.::::::: .......:: ::.::. :::.::.:::::::::::::
CCDS30 TLLQGEYPPQLSYTELAA--------KSGGLA--------LPYFNGTGTVQKGRPRKRKS
180 190 200 210 220
240 250 260 270 280
pF1KB7 PGPGADLAAYNAALSCNENDAEHLDRDQ-PYPSSQKTKRMRTSFKHHQLRTMKSYFAINH
:. :.:.. ::. .::::.:.:::::: ::: :::::::::::::::::::::::::::
CCDS30 PALGVDIVNYNS--GCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINH
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB7 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGP
::::::::::::::::::::::::::::::::::::::::: ::::. ..: :. :
CCDS30 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSL----PAPP
290 300 310 320 330
350 360 370 380 390 400
pF1KB7 ASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
... ...:.: .: :::::::.::. .:.::: .:...:: :::::::::::
CCDS30 SAD--SGALTPPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQTTLTNLF
340 350 360 370 380
>>CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 (397 aa)
initn: 1824 init1: 930 opt: 1029 Z-score: 729.5 bits: 143.9 E(32554): 2.6e-34
Smith-Waterman score: 1891; 70.3% identity (85.5% similar) in 407 aa overlap (1-406:20-397)
10 20 30 40
pF1KB7 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETT
::::..:: ...:...::.::.:.:: ..: : ..
CCDS13 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAG
10 20 30 40 50
50 60 70 80 90 100
pF1KB7 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIY
:: .: .. ::::::::::::::::::::::::.:::::::::: ::::::::.::::::
CCDS13 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 CKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDS
:::::::::::::::::::::::::::::::: ::::.::::.:::: ::::::::::::
CCDS13 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 LVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQ
::::: :::.::::::: .......:: ::.::. :::.::.::::
CCDS13 LVYCRAHFETLLQGEYPPQLSYTELAA--------KSGGLA--------LPYFNGTGTVQ
180 190 200 210 220
230 240 250 260 270 280
pF1KB7 KGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQ-PYPSSQKTKRMRTSFKHHQLRT
::::::::::. :.:.. ::. .::::.:.:::::: ::: ::::::::::::::::::
CCDS13 KGRPRKRKSPALGVDIVNYNS--GCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRT
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB7 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAA
:::::::::::::::::::::::::::::::::::::::::::::::::: ::::. ..
CCDS13 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB7 LQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQT
: :. :... ...:.: .: :::::::.::. .:.::: .:...:: :::::
CCDS13 L----PAPPSAD--SGALTPPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQT
350 360 370 380 390
pF1KB7 TLTNLF
::::::
CCDS13 TLTNLF
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 448 init1: 255 opt: 461 Z-score: 338.4 bits: 71.4 E(32554): 1.6e-12
Smith-Waterman score: 596; 35.9% identity (59.8% similar) in 301 aa overlap (51-346:25-274)
30 40 50 60 70
pF1KB7 RAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYL-LAVDKQWHMRCLK
:.:.:::..: :.. : .. : .:: :::
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLK
10 20 30 40 50
80 90 100 110 120 130
pF1KB7 CCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLN
: ::. :. ::: .::. :::.:: : :.. .::.:..:.:.:..:::::: :::..
CCDS10 CAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLVMRARDSVYHIE
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB7 CFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSA
:: :..:...: ::.:.... . :: ::. :::.. .:
CCDS10 CFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE---------------RAAAGSPRSP
120 130 140 150
200 210 220 230 240 250
pF1KB7 GLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQP
: :: : :: : : ::. .:.
CCDS10 G-PLPGARGLHLPD-AGSGRQPALRPHVHKQ-----------------------------
160 170 180
260 270 280 290 300 310
pF1KB7 YPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA
..:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: :
CCDS10 ---TEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC
190 200 210 220 230 240
320 330 340 350 360 370
pF1KB7 KFRRN--LLRQ--ENTGVDKSTDAALQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTL
: ... :..: .. ::.. .: ::::
CCDS10 KDKKKSILMKQLQQQQHSDKTSLQGL-TGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKA
250 260 270 280 290 300
380 390 400
pF1KB7 PTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
CCDS10 LSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
310 320 330 340 350
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 521 init1: 192 opt: 461 Z-score: 337.9 bits: 71.4 E(32554): 1.7e-12
Smith-Waterman score: 470; 28.6% identity (55.3% similar) in 398 aa overlap (22-400:3-377)
10 20 30 40 50
pF1KB7 MLFHSLSGPEVHGVIDEMDRRAKSE-APAISSAIDRGDTETTMPSISSD---RAALCAGC
:..: .:: :: :: .. . .: . :::::
CCDS69 MEARGELGPARESA--GGDLLLALLARRADLRREIPLCAGC
10 20 30
60 70 80 90 100 110
pF1KB7 GGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCA
.: ::. : :.:..:: .:::: .:. : . :::. :.:::.:...::.. .::
CCDS69 DQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDFFKRFGT-KCA
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 RCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEALLQG
:.::: ...: ::.:.::::.::.:..:...:.:::.: :.:: . :. .:. :
CCDS69 ACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 EYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGA
: : .. .. .: . ::: :: . . :.. : :
CCDS69 EAEATAKRPRTTITAKQLETLKSA--------------YNTSPKPAR-HVREQLSSETGL
160 170 180 190 200
240 250 260 270 280
pF1KB7 DLAAYNAALSCNENDAEHLDRDQ------PYPSSQKTKRMRTSFKHHQLRTMKSYFAINH
:. . .. .. . ..: .: : ..: .: .. . ... .. :
CCDS69 DMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVS
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB7 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDA-ALQTGTPSG
:: .: ... .:: . . .: . . . :. :. . :. :.: :
CCDS69 FPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYG
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB7 -PASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGN------LEGHEPHSPSQTT
: : . :: :. : :..:. : .. : ...::. : :. : : .:
CCDS69 VPPSPAAPQSL-PGPQPL-LSSLVYPDT-SLGLVPSGAPGGPPPMRVLAGNGPSSDLSTG
330 340 350 360 370
pF1KB7 LTNLF
CCDS69 SSGGYPDFPASPASWLDEVDHAQF
380 390 400
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 521 init1: 192 opt: 459 Z-score: 336.6 bits: 71.2 E(32554): 2e-12
Smith-Waterman score: 468; 29.0% identity (56.2% similar) in 365 aa overlap (52-400:30-372)
30 40 50 60 70 80
pF1KB7 AKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCC
::::: .: ::. : :.:..:: .::::
CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS
10 20 30 40 50
90 100 110 120 130 140
pF1KB7 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCF
.:. : . :::. :.:::.:...::.. .:: :.::: ...: ::.:.::::.::
CCDS69 DCHTPLAER--CFSRGESVYCKDDFFKRFGT-KCAACQLGIPPTQVVRRAQDFVYHLHCF
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB7 TCTTCNKMLTTGDHFG-MKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAG
.:..:...:.:::.: :.:: . :. .:. : : : .. .. .: . :::
CCDS69 ACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSA-
120 130 140 150 160 170
210 220 230 240 250
pF1KB7 LGAAGANPLGLPYYNGVGTVQKGRP-RKRKSPGPGADLAAYNAALSCNENDAEHLDRDQ-
:: . . .: :.. : : :. . .. .. . ..: .:
CCDS69 -------------YNT--SPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAG
180 190 200 210 220
260 270 280 290 300 310
pF1KB7 -----PYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVW
: ..: .: .. . ... .. : :: .: ... .:: . .
CCDS69 RQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPT
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB7 FQNARAKFRRNLLRQENTGVDKSTDA-ALQTGTPSG-PASELSNASLSPSSTPTTLTDLT
.: . . . :. :. . :. :.: : : : . :: :. : :..:.
CCDS69 QALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSL-PGPQPL-LSSLV
290 300 310 320 330
380 390 400
pF1KB7 SPTLPTVTSVLTSVPGN------LEGHEPHSPSQTTLTNLF
: .. : ...::. : :. : : .:
CCDS69 YPDT-SLGLVPSGAPGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF
340 350 360 370 380 390
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 398 init1: 236 opt: 443 Z-score: 326.2 bits: 69.0 E(32554): 7.6e-12
Smith-Waterman score: 573; 34.5% identity (61.2% similar) in 322 aa overlap (34-351:3-269)
10 20 30 40 50 60
pF1KB7 HSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDR
: :: : .. .::.:::..: :.
CCDS43 MGDMGD-----PPKKKRLISLCVGCGNQIHDQ
10 20
70 80 90 100 110 120
pF1KB7 YYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGI
: : .. : .:: :::: ::. :. ::: .::. :::.:: : ... .::.: .:.
CCDS43 YILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGF
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB7 SASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFN
: ...:::::. :::..:: :..:...: ::.:..... ..:: .
CCDS43 SKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA--------------D
90 100 110 120 130
190 200 210 220 230 240
pF1KB7 HADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNA
: ::. . :.:::. .::. : .. .:: . . : ..: .
CCDS43 H-DVV---------ERASLGAG--DPLS-P-------LHPARPLQMAAE-P---ISARQP
140 150 160
250 260 270 280 290 300
pF1KB7 ALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQK
:: :. . :: .:: :.:: ....::.:... .: : ::: .::..
CCDS43 ALR------PHVHK-QP----EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEM
170 180 190 200 210
310 320 330 340 350
pF1KB7 TGLTKRVLQVWFQNARAKFRRN--LLRQ-ENTGVDKSTDAALQTGTPSGPASELSNASLS
:::. ::..::::: : : .. ...: .. . .:. .:::: ::
CCDS43 TGLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGL
220 230 240 250 260 270
360 370 380 390 400
pF1KB7 PSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
CCDS43 QANPVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPD
280 290 300 310 320 330
>>CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 (402 aa)
initn: 515 init1: 190 opt: 442 Z-score: 324.8 bits: 69.0 E(32554): 9e-12
Smith-Waterman score: 552; 36.4% identity (63.2% similar) in 272 aa overlap (53-323:5-237)
30 40 50 60 70 80
pF1KB7 KSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCE
:::: : ::. : ..:. ::..:..:::
CCDS91 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCE
10 20 30
90 100 110 120 130 140
pF1KB7 CKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFT
:: :: :: :::..:..:::.:..:::.. .:: : ::: :..: .::. :.::::::
CCDS91 CKTNL-SE-KCFSREGKLYCKNDFFRRFGT-KCAGCAQGISPSDLVRKARSKVFHLNCFT
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB7 CTTCNKMLTTGDHFGMKDSLVY-CRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGL
: .:::.:.::... . : . :. . . . ...... .... . . : :
CCDS91 CMVCNKQLSTGEELYVIDENKFVCKDDYLS------SSSLKEGSLNSVSSCTDRSLSPDL
100 110 120 130 140
210 220 230 240 250 260
pF1KB7 GAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYP
: . : :. . . ..: . : :::. ..
CCDS91 QDA----------------LQDDP-KETDNSTSSDKETAN-----NENEEQN--------
150 160 170
270 280 290 300 310 320
pF1KB7 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF
:. : . ::..: .::.:.:. :: . .: . .::::.:::. ::.:::::: :.:
CCDS91 SGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKE
180 190 200 210 220 230
330 340 350 360 370 380
pF1KB7 RRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSV
::
CCDS91 RRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDF
240 250 260 270 280 290
>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 (155 aa)
initn: 378 init1: 234 opt: 430 Z-score: 321.0 bits: 66.9 E(32554): 1.5e-11
Smith-Waterman score: 430; 43.0% identity (66.9% similar) in 151 aa overlap (37-180:4-153)
10 20 30 40 50 60
pF1KB7 SGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSIS---SDRAALCAGCGGKISDR
: : .: .: . . ::::. ::.::
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDR
10 20 30
70 80 90 100 110 120
pF1KB7 YYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHL
: : :.:: :: :::: :.:.:. : : ..: . : :..:: : : .. :: :
CCDS58 YLLKALDKYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSK
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE-ALLQGEYPA
: : :::::::: ::::.::.: ::. . .::.: .:.... :.. .: . :.: . .
CCDS58 LIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFES
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAA
.
CCDS58 QVQ
>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 (156 aa)
initn: 378 init1: 234 opt: 430 Z-score: 320.9 bits: 66.9 E(32554): 1.5e-11
Smith-Waterman score: 430; 43.0% identity (66.9% similar) in 151 aa overlap (37-180:5-154)
10 20 30 40 50 60
pF1KB7 SGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSIS---SDRAALCAGCGGKISDR
: : .: .: . . ::::. ::.::
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDR
10 20 30
70 80 90 100 110 120
pF1KB7 YYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHL
: : :.:: :: :::: :.:.:. : : ..: . : :..:: : : .. :: :
CCDS44 YLLKALDKYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSK
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE-ALLQGEYPA
: : :::::::: ::::.::.: ::. . .::.: .:.... :.. .: . :.: . .
CCDS44 LIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFES
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 HFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAA
.
CCDS44 QVQ
406 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:49:23 2016 done: Sat Nov 5 17:49:24 2016
Total Scan time: 3.080 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]