FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7680, 406 aa
  1>>>pF1KB7680 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3881+/-0.000934; mu= 9.1394+/- 0.057
 mean_var=381.7415+/-80.292, 0's: 0 Z-trim(117.0): 29  B-trim: 1082 in 1/54
 Lambda= 0.065643
 statistics sampled from 17641 (17668) to 17641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.543), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS34424.1 RING1 gene_id:6015|Hs108|chr6          ( 406) 2796 278.2 9.6e-75
CCDS1365.1 RNF2 gene_id:6045|Hs108|chr1            ( 336)  882 96.8 3.2e-20


>>CCDS34424.1 RING1 gene_id:6015|Hs108|chr6               (406 aa)
 initn: 2796 init1: 2796 opt: 2796  Z-score: 1455.3  bits: 278.2 E(32554): 9.6e-75
Smith-Waterman score: 2796; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB7 MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ
              310       320       330       340       350       360

              370       380       390       400      
pF1KB7 YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK
              370       380       390       400      

>>CCDS1365.1 RNF2 gene_id:6045|Hs108|chr1                 (336 aa)
 initn: 1379 init1: 872 opt: 882  Z-score: 476.5  bits: 96.8 E(32554): 3.2e-20
Smith-Waterman score: 1244; 55.2% identity (69.8% similar) in 400 aa overlap (8-406:11-336)

                  10        20        30        40        50       
pF1KB7    MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKN
                 :  :::::::::::.::::::: :: ::.:::::::::::::::::::::
CCDS13 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 TMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEY
       ::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::.::
CCDS13 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB7 EAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPG
       ::::.::: :... .:::::: ::::::..:::.: ::      :. :   . .: :  .
CCDS13 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQR------GKKQ--QIENGSG--A
              130       140       150             160           170

       180       190        200       210       220       230      
pF1KB7 EGEGDGEDVSSDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG
       : .::.   :. :.  ..  ::. :: .                        :.::: . 
CCDS13 EDNGDSSHCSNASTHSNQEAGPSNKRTKT-----------------------SDDSGLEL
              180       190                              200       

        240       250       260       270       280       290      
pF1KB7 GTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLS
        . ...    :   ::       .:::::::::: :.:: .  ::::.::.:::::::::
CCDS13 DNNNAAMAIDPVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLS
       210       220              230       240       250       260

        300       310       320       330       340       350      
pF1KB7 KYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGV
       ::::.:.:::. ...                      ::..              .:. .
CCDS13 KYLAVRLALEELRSK----------------------GESNQM------------NLDTA
              270                             280                  

        360       370       380       390       400      
pF1KB7 SEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK
       :::::::::: ..: ::.::::..::::.::.:::..:.:: :::::. :
CCDS13 SEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK
        290       300       310       320       330      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:32:00 2016 done: Fri Nov  4 21:32:01 2016
 Total Scan time:  3.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]