FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7707, 419 aa
  1>>>pF1KB7707 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6620+/-0.000729; mu= 11.5110+/- 0.044
 mean_var=95.1308+/-19.068, 0's: 0 Z-trim(111.5): 4  B-trim: 0 in 0/49
 Lambda= 0.131496
 statistics sampled from 12427 (12430) to 12427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.382), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS6098.1 BRF2 gene_id:55290|Hs108|chr8           ( 419) 2822 545.2 4.4e-155


>>CCDS6098.1 BRF2 gene_id:55290|Hs108|chr8                (419 aa)
 initn: 2822 init1: 2822 opt: 2822  Z-score: 2897.8  bits: 545.2 E(32554): 4.4e-155
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ENEQVSRSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ENEQVSRSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 CVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LQHRQSLVRSAFRDGTAEVETREKEPPGWGQGQGEGEVGNNSLGLPQGKRPASPALLLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LQHRQSLVRSAFRDGTAEVETREKEPPGWGQGQGEGEVGNNSLGLPQGKRPASPALLLPP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 CMLKSPKRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQAARQAATSVPNPP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 CMLKSPKRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQAARQAATSVPNPP
              370       380       390       400       410         




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:06:12 2016 done: Fri Nov  4 22:06:13 2016
 Total Scan time:  3.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]