FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7707, 419 aa
  1>>>pF1KB7707 419 - 419 aa - 419 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4615+/-0.000321; mu= 12.6684+/- 0.020
 mean_var=99.1749+/-20.799, 0's: 0 Z-trim(118.3): 4  B-trim: 1882 in 2/52
 Lambda= 0.128787
 statistics sampled from 31110 (31114) to 31110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.365), width:  16
 Scan time:  9.000

The best scores are:                                      opt bits E(85289)
NP_060780 (OMIM: 607013) transcription factor IIIB ( 419) 2822 534.4  2e-151


>>NP_060780 (OMIM: 607013) transcription factor IIIB 50   (419 aa)
 initn: 2822 init1: 2822 opt: 2822  Z-score: 2839.7  bits: 534.4 E(85289): 2e-151
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ENEQVSRSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENEQVSRSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQSLQPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLRVLRLDKRSVVKHIGDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LQHRQSLVRSAFRDGTAEVETREKEPPGWGQGQGEGEVGNNSLGLPQGKRPASPALLLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQHRQSLVRSAFRDGTAEVETREKEPPGWGQGQGEGEVGNNSLGLPQGKRPASPALLLPP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 CMLKSPKRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQAARQAATSVPNPP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CMLKSPKRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQAARQAATSVPNPP
              370       380       390       400       410         




419 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:06:13 2016 done: Fri Nov  4 22:06:14 2016
 Total Scan time:  9.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]