Result of FASTA (omim) for
pF1KB7728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7728, 479 aa
1>>>pF1KB7728 479 - 479 aa - 479 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2103+/-0.000363; mu= 13.6557+/- 0.023
mean_var=85.5543+/-17.202, 0's: 0 Z-trim(115.2): 35 B-trim: 783 in 1/53
Lambda= 0.138661
statistics sampled from 25426 (25461) to 25426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.299), width: 16
Scan time: 9.720
The best scores are: opt bits E(85289)
NP_055368 (OMIM: 609785) transcription factor CP2- ( 479) 3257 661.5 1.4e-189
XP_016859391 (OMIM: 609785) PREDICTED: transcripti ( 406) 2735 557.1 3.3e-158
NP_005644 (OMIM: 189889) alpha-globin transcriptio ( 502) 2414 492.9 8.6e-139
NP_001166923 (OMIM: 189889) alpha-globin transcrip ( 501) 2397 489.5 9e-138
NP_001121632 (OMIM: 609784) upstream-binding prote ( 504) 1854 380.9 4.5e-105
XP_016859393 (OMIM: 609785) PREDICTED: transcripti ( 273) 1746 359.2 8.6e-99
XP_016859394 (OMIM: 609785) PREDICTED: transcripti ( 273) 1738 357.6 2.6e-98
XP_016859392 (OMIM: 609785) PREDICTED: transcripti ( 274) 1524 314.7 2e-85
NP_001121633 (OMIM: 609784) upstream-binding prote ( 540) 1403 290.7 7e-78
NP_055332 (OMIM: 609784) upstream-binding protein ( 540) 1403 290.7 7e-78
NP_001166924 (OMIM: 189889) alpha-globin transcrip ( 450) 848 179.6 1.6e-44
XP_005246216 (OMIM: 609786) PREDICTED: grainyhead- ( 429) 381 86.2 2e-16
XP_016859390 (OMIM: 609786) PREDICTED: grainyhead- ( 467) 366 83.2 1.7e-15
NP_937825 (OMIM: 609786) grainyhead-like protein 1 ( 618) 366 83.3 2.2e-15
XP_006711947 (OMIM: 609786) PREDICTED: grainyhead- ( 441) 361 82.2 3.3e-15
XP_011515609 (OMIM: 608576,608641,616029) PREDICTE ( 591) 355 81.0 9.7e-15
XP_011515608 (OMIM: 608576,608641,616029) PREDICTE ( 609) 355 81.0 9.9e-15
NP_001317522 (OMIM: 608576,608641,616029) grainyhe ( 609) 355 81.0 9.9e-15
NP_079191 (OMIM: 608576,608641,616029) grainyhead- ( 625) 355 81.1 1e-14
XP_011540172 (OMIM: 606713,608317) PREDICTED: grai ( 509) 352 80.4 1.3e-14
XP_011540171 (OMIM: 606713,608317) PREDICTED: grai ( 556) 352 80.4 1.4e-14
NP_001181939 (OMIM: 606713,608317) grainyhead-like ( 556) 352 80.4 1.4e-14
NP_937816 (OMIM: 606713,608317) grainyhead-like pr ( 602) 352 80.4 1.5e-14
NP_067003 (OMIM: 606713,608317) grainyhead-like pr ( 607) 352 80.4 1.5e-14
NP_937817 (OMIM: 606713,608317) grainyhead-like pr ( 626) 352 80.5 1.5e-14
XP_016859389 (OMIM: 609786) PREDICTED: grainyhead- ( 479) 346 79.2 2.8e-14
XP_011508645 (OMIM: 609786) PREDICTED: grainyhead- ( 583) 346 79.2 3.3e-14
XP_006711945 (OMIM: 609786) PREDICTED: grainyhead- ( 630) 346 79.3 3.6e-14
>>NP_055368 (OMIM: 609785) transcription factor CP2-like (479 aa)
initn: 3257 init1: 3257 opt: 3257 Z-score: 3524.5 bits: 661.5 E(85289): 1.4e-189
Smith-Waterman score: 3257; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KB7 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN
370 380 390 400 410 420
430 440 450 460 470
pF1KB7 LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL
430 440 450 460 470
>>XP_016859391 (OMIM: 609785) PREDICTED: transcription f (406 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 2961.2 bits: 557.1 E(85289): 3.3e-158
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB7 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN
:::::::::::::::::::::::::::::::::::::::
XP_016 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSDGAELPR
370 380 390 400
430 440 450 460 470
pF1KB7 LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL
>>NP_005644 (OMIM: 189889) alpha-globin transcription fa (502 aa)
initn: 2065 init1: 1475 opt: 2414 Z-score: 2612.8 bits: 492.9 E(85289): 8.6e-139
Smith-Waterman score: 2414; 74.6% identity (91.5% similar) in 469 aa overlap (16-476:35-502)
10 20 30 40
pF1KB7 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
.:.: . :::::::::::: .: :.:: ..
NP_005 LKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDNENKI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
:.:::::::::::::::.:::::::::::::::.:.:::::.. ..: : ::::.::::
NP_005 LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
::::::::::::::::::.::::::::::::.::::.::::.:::::.::::::::::.:
NP_005 HDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
.:::::::::::: :::::::::::::::::::.::::::::::::::::::::::::::
NP_005 VFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGAD
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGL
:::::::::::::: .:::::::::::::::::::::...: ::..:::..:.: .::.:
NP_005 RKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPEITY-VNNSPSPGFNSSHSSFSL
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 GEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRD
::::.::.: : : .:.:::... :.::::::::::: : :::..::::::::..::
NP_005 GEGNGSPNHQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRD
310 320 330 340 350 360
350 360 370 380 390
pF1KB7 DLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQEL-----EQNRVPLQQKRDGSGDSNLS
:..::::::::::::::.::: :::..::::::: .:.. ::.. .:::: .
NP_005 DVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQKHEDGDSNGT
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB7 --VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESC
:::::.:::::..:: ::::.:.:::: .: ..:.::::::::..:.::.::::.:.:
NP_005 FFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDEMIQNFQEEAC
430 440 450 460 470 480
460 470
pF1KB7 FVLSTIKAESNDGYHIILKCGL
:.:.:.:::.::.::::::
NP_005 FILDTMKAETNDSYHIILK
490 500
>>NP_001166923 (OMIM: 189889) alpha-globin transcription (501 aa)
initn: 2385 init1: 1475 opt: 2397 Z-score: 2594.4 bits: 489.5 E(85289): 9e-138
Smith-Waterman score: 2397; 74.4% identity (91.3% similar) in 469 aa overlap (16-476:35-501)
10 20 30 40
pF1KB7 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
.:.: . :::::::::::: .: :.:: ..
NP_001 LKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDNENKI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
:.:::::::::::::::.:::::::::::::::.:.:::::.. ..: : ::::.::::
NP_001 LPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
::::::::::::::::::.::::::::::::.::::.::::.:::::.::::::::::.:
NP_001 HDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
.:::::::::::: :::::::::::::::::::.::::::::::::::::::::::::::
NP_001 VFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGAD
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGL
:::::::::::::: .:::::::::::::::::::::...: ::..:::..:.: .::.:
NP_001 RKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPEITY-VNNSPSPGFNSSHSSFSL
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 GEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRD
::::.::.: : : .:.:::... :.::::::::::: : :::..::::::::..::
NP_001 GEGNGSPNHQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRD
310 320 330 340 350 360
350 360 370 380 390
pF1KB7 DLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQEL-----EQNRVPLQQKRDGSGDSNLS
:..::::::::::::::.::: :::..::::::: .:.. ::.. .:::: .
NP_001 DVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQKHEDGDSNGT
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB7 --VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESC
:::::.:::::..:: ::::.:.:::: .: ..:.::::::::..:.::.::::.:.:
NP_001 FFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDEMIQNFQEEAC
430 440 450 460 470 480
460 470
pF1KB7 FVLSTIKAESNDGYHIILKCGL
:.:.:.: :.::.::::::
NP_001 FILDTMK-ETNDSYHIILK
490 500
>>NP_001121632 (OMIM: 609784) upstream-binding protein 1 (504 aa)
initn: 2156 init1: 1446 opt: 1854 Z-score: 2007.3 bits: 380.9 E(85289): 4.5e-105
Smith-Waterman score: 2176; 68.1% identity (89.2% similar) in 474 aa overlap (16-476:32-504)
10 20 30 40
pF1KB7 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
.:.: . :::::::::::. .: ..:..
NP_001 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
NP_001 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
NP_001 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
NP_001 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
190 200 210 220 230 240
230 240 250 260 270
pF1KB7 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDV--AYQVNSAPSPSYN-GSP--
:::::::::::::::.:::::::::.::::::::::::. :: ::..:::. . ::
NP_001 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAY-VNNSPSPAPTFTSPQQ
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 NSFGLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGAD
.. .. ..:.: :.: . : ...... :::.::..:::: .::::.. :::..:::::
NP_001 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB7 LLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRV-PLQQKRDGSGDS
:::....::::::: ::::::.:..:.:.:::..:::::.: .. : ::. .:..
NP_001 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB7 NLS----VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNF
: : :::::.:::. . :. .:.: ...: ..:..::::::::::..::..:::::
NP_001 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
430 440 450 460 470 480
460 470
pF1KB7 QDESCFVLSTIKAESNDGYHIILKCGL
::::::..::.::::.:: :::::
NP_001 QDESCFLFSTVKAESSDGIHIILK
490 500
>>XP_016859393 (OMIM: 609785) PREDICTED: transcription f (273 aa)
initn: 1744 init1: 1744 opt: 1746 Z-score: 1894.7 bits: 359.2 E(85289): 8.6e-99
Smith-Waterman score: 1746; 96.3% identity (96.7% similar) in 270 aa overlap (1-262:1-270)
10 20 30 40 50 60
pF1KB7 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 EKEKYQPSYETTILTE----CS----PWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPT
:::::::::::::::: :: :: .
XP_016 EKEKYQPSYETTILTEPQPLCSSADCPWEERSW
250 260 270
>>XP_016859394 (OMIM: 609785) PREDICTED: transcription f (273 aa)
initn: 1738 init1: 1738 opt: 1738 Z-score: 1886.0 bits: 357.6 E(85289): 2.6e-98
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)
10 20 30 40 50 60
pF1KB7 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
::::::::::::::::
XP_016 EKEKYQPSYETTILTEEAQRDPLGTSLAPGVTY
250 260 270
>>XP_016859392 (OMIM: 609785) PREDICTED: transcription f (274 aa)
initn: 1524 init1: 1524 opt: 1524 Z-score: 1654.6 bits: 314.7 E(85289): 2e-85
Smith-Waterman score: 1524; 98.7% identity (100.0% similar) in 226 aa overlap (254-479:49-274)
230 240 250 260 270 280
pF1KB7 DRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFG
...:::::::::::::::::::::::::::
XP_016 LLNISAGFLHVALVTCLAVAHCGHWVNAGCVSQCSPWPDVAYQVNSAPSPSYNGSPNSFG
20 30 40 50 60 70
290 300 310 320 330 340
pF1KB7 LGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSR
80 90 100 110 120 130
350 360 370 380 390 400
pF1KB7 DDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHA
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB7 IFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTI
200 210 220 230 240 250
470
pF1KB7 KAESNDGYHIILKCGL
::::::::::::::::
XP_016 KAESNDGYHIILKCGL
260 270
>>NP_001121633 (OMIM: 609784) upstream-binding protein 1 (540 aa)
initn: 2142 init1: 1385 opt: 1403 Z-score: 1519.2 bits: 290.7 E(85289): 7e-78
Smith-Waterman score: 2031; 62.9% identity (82.7% similar) in 498 aa overlap (16-464:32-528)
10 20 30 40
pF1KB7 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
.:.: . :::::::::::. .: ..:..
NP_001 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
NP_001 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
NP_001 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
NP_001 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
190 200 210 220 230 240
230 240 250
pF1KB7 RKQKTDREKMEKRTAQEKEKYQPSYETTILTE----------------------------
:::::::::::::::.:::::::::.::::::
NP_001 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADYG
250 260 270 280 290 300
260 270 280 290 300
pF1KB7 --------CSPWPDV--AYQVNSAPSPSYN-GSP--NSFGLGEGNAS-PTHPVE-ALPVG
::::::. :: ::..:::. . :: .. .. ..:.: :.: . : ..
NP_001 DSLAKRGSCSPWPDAPTAY-VNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB7 SDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFNA
.... :::.::..:::: .::::.. :::..::::::::....::::::: ::::::.:.
NP_001 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
370 380 390 400 410 420
370 380 390 400 410
pF1KB7 IKGRNVRPKMTIYVCQELEQNRV-PLQQKRDGSGDSNLS----VYHAIFLEELTTLELIE
.:.:.:::..:::::.: .. : ::. .:.. : : :::::.:::. . :. .
NP_001 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB7 KIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILK
:.: ...: ..:..::::::::::..::..:::::::::::..::.:
NP_001 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
490 500 510 520 530 540
pF1KB7 CGL
>>NP_055332 (OMIM: 609784) upstream-binding protein 1 is (540 aa)
initn: 2142 init1: 1385 opt: 1403 Z-score: 1519.2 bits: 290.7 E(85289): 7e-78
Smith-Waterman score: 2031; 62.9% identity (82.7% similar) in 498 aa overlap (16-464:32-528)
10 20 30 40
pF1KB7 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
.:.: . :::::::::::. .: ..:..
NP_055 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
NP_055 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
NP_055 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
NP_055 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
190 200 210 220 230 240
230 240 250
pF1KB7 RKQKTDREKMEKRTAQEKEKYQPSYETTILTE----------------------------
:::::::::::::::.:::::::::.::::::
NP_055 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADYG
250 260 270 280 290 300
260 270 280 290 300
pF1KB7 --------CSPWPDV--AYQVNSAPSPSYN-GSP--NSFGLGEGNAS-PTHPVE-ALPVG
::::::. :: ::..:::. . :: .. .. ..:.: :.: . : ..
NP_055 DSLAKRGSCSPWPDAPTAY-VNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB7 SDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFNA
.... :::.::..:::: .::::.. :::..::::::::....::::::: ::::::.:.
NP_055 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
370 380 390 400 410 420
370 380 390 400 410
pF1KB7 IKGRNVRPKMTIYVCQELEQNRV-PLQQKRDGSGDSNLS----VYHAIFLEELTTLELIE
.:.:.:::..:::::.: .. : ::. .:.. : : :::::.:::. . :. .
NP_055 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB7 KIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILK
:.: ...: ..:..::::::::::..::..:::::::::::..::.:
NP_055 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
490 500 510 520 530 540
pF1KB7 CGL
479 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:46:23 2016 done: Mon Nov 7 04:46:24 2016
Total Scan time: 9.720 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]