Result of FASTA (ccds) for
pF1KB7777
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7777, 453 aa
1>>>pF1KB7777 453 - 453 aa - 453 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7934+/-0.000903; mu= 12.7226+/- 0.055
mean_var=131.1914+/-25.471, 0's: 0 Z-trim(110.5): 15 B-trim: 47 in 1/50
Lambda= 0.111975
statistics sampled from 11620 (11627) to 11620 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.357), width: 16
Scan time: 3.140
The best scores are: opt bits E(32554)
CCDS5374.1 CDCA7L gene_id:55536|Hs108|chr7 ( 454) 3015 498.3 6.8e-141
CCDS47559.1 CDCA7L gene_id:55536|Hs108|chr7 ( 420) 2785 461.1 9.9e-130
CCDS47558.1 CDCA7L gene_id:55536|Hs108|chr7 ( 408) 2367 393.5 2e-109
CCDS2252.1 CDCA7 gene_id:83879|Hs108|chr2 ( 450) 832 145.6 9.8e-35
CCDS2253.1 CDCA7 gene_id:83879|Hs108|chr2 ( 371) 739 130.5 2.8e-30
>>CCDS5374.1 CDCA7L gene_id:55536|Hs108|chr7 (454 aa)
initn: 2672 init1: 2672 opt: 3015 Z-score: 2642.9 bits: 498.3 E(32554): 6.8e-141
Smith-Waterman score: 3015; 99.8% identity (99.8% similar) in 454 aa overlap (1-453:1-454)
10 20 30 40 50
pF1KB7 MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQ-DVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS53 MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQQDVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 HSKYFTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HSKYFTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 EDEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EDEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTIL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 FFPVRTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FFPVRTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSF
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB7 RRRKTIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRRKTIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKT
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB7 IDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDG
370 380 390 400 410 420
420 430 440 450
pF1KB7 RCATGILIHLAKFYGYDNVKEYLESLQKELVEDN
::::::::::::::::::::::::::::::::::
CCDS53 RCATGILIHLAKFYGYDNVKEYLESLQKELVEDN
430 440 450
>>CCDS47559.1 CDCA7L gene_id:55536|Hs108|chr7 (420 aa)
initn: 2672 init1: 2672 opt: 2785 Z-score: 2442.6 bits: 461.1 E(32554): 9.9e-130
Smith-Waterman score: 2785; 99.8% identity (99.8% similar) in 420 aa overlap (35-453:1-420)
10 20 30 40 50 60
pF1KB7 TRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQ-DVRFHSKY
::::::::::::::::::::: ::::::::
CCDS47 METLSSEESCDSFDSLESGKQQDVRFHSKY
10 20 30
70 80 90 100 110 120
pF1KB7 FTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEEEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEEEDEE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 EDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILERKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILERKK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 DCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPV
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 RTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFRRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFRRRK
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 TIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB7 TVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCAT
340 350 360 370 380 390
430 440 450
pF1KB7 GILIHLAKFYGYDNVKEYLESLQKELVEDN
::::::::::::::::::::::::::::::
CCDS47 GILIHLAKFYGYDNVKEYLESLQKELVEDN
400 410 420
>>CCDS47558.1 CDCA7L gene_id:55536|Hs108|chr7 (408 aa)
initn: 2367 init1: 2367 opt: 2367 Z-score: 2077.8 bits: 393.5 E(32554): 2e-109
Smith-Waterman score: 2631; 90.1% identity (90.1% similar) in 453 aa overlap (1-453:1-408)
10 20 30 40 50 60
pF1KB7 MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQDVRFH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQ-----
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SKYFTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEEE
::::::::::::::::::::
CCDS47 ----------------------------------------VVESDLSDDGKASLVSEEEE
60 70
130 140 150 160 170 180
pF1KB7 DEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILE
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB7 RKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDF
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB7 FPVRTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FPVRTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFR
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB7 RRKTIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRKTIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTI
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB7 DTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGR
320 330 340 350 360 370
430 440 450
pF1KB7 CATGILIHLAKFYGYDNVKEYLESLQKELVEDN
:::::::::::::::::::::::::::::::::
CCDS47 CATGILIHLAKFYGYDNVKEYLESLQKELVEDN
380 390 400
>>CCDS2252.1 CDCA7 gene_id:83879|Hs108|chr2 (450 aa)
initn: 983 init1: 728 opt: 832 Z-score: 737.1 bits: 145.6 E(32554): 9.8e-35
Smith-Waterman score: 1056; 43.3% identity (64.5% similar) in 453 aa overlap (33-449:26-446)
10 20 30 40 50 60
pF1KB7 LATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSS-EESCDSFDSLESGKQDVRFHS
. ::: :: ..::::: : . .. .:.:
CCDS22 MDARRVPQKDLRVKKNLKKFRYVKLISMETSSSSDDSCDSFASDNFANTKPKFRS
10 20 30 40 50
70 80 90 100
pF1KB7 KYFTEELRRIFIEDTDSETEDFAGFTQSDLNG---------KTNPEVM-----VVESDLS
..::: .: ::.:.:. : ::..:... : :.: . ..: :
CCDS22 D-ISEELANVFYEDSDNES--FCGFSESEVQDVLDHCGFLQKPRPDVTNELAGIFHAD-S
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 DDGKASLVSEEEEDEEEDKATPR---RSRSR-RSSIGLRVAFQFPTKKLANKPDKNSSSE
:: . :: : .. . : :.::. : : ::::..::... . .:.. :.
CCDS22 DDESFCGFSESEIQDGMRLQSVREGCRTRSQCRHSGPLRVAMKFPARSTRGATNKKAESR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 QLFSSARLQNEKKTILERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKEN
: :.:...:..::.::: . . : ::..:::.:
CCDS22 Q-------------------------PSENSVTDSNSDSEDES--GMNFLEKRALNIKQN
180 190 200
230 240 250 260 270 280
pF1KB7 KAMLAQLLAELNSMPDFFPVRTPT--SASRKKTVRRAFSEGQITRRMNPTRSARPPEKF-
:::::.:..::.:.: : : : : :... :: : .:: :: : ::: .
CCDS22 KAMLAKLMSELESFPGSFRGRHPLPGSDSQSRRPRRRTFPGVASRR-NPERRARPLTRSR
210 220 230 240 250 260
290 300 310 320
pF1KB7 -----ALENFTVSAAKFAEEFYSFRRRKTIGGKCRE----YRRRHRISS-----FRPVED
.:. . . . .... :.:::. : : :: : : .::::.
CCDS22 SRILGSLDALPMEEEEEEDKYMLVRKRKTVDGYMNEDDLPRSRRSRSSVTLPHIIRPVEE
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB7 ITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNR
::::.:::: . :.:::.. ::.:::::::::::::: ::: : ::::::::::::::
CCDS22 ITEEELENVCSNSREKIYNRSLGSTCHQCRQKTIDTKTNCRNPDCWGVRGQFCGPCLRNR
330 340 350 360 370 380
390 400 410 420 430 440
pF1KB7 YGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCATGILIHLAKFYGYDNVKEYLESLQ
:::.::.:::::.: :::::::::::.::.::::::::.:..:::..:. ::. ::.::.
CCDS22 YGEEVRDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFGNVHAYLKSLK
390 400 410 420 430 440
450
pF1KB7 KELVEDN
.:.
CCDS22 QEFEMQA
450
>>CCDS2253.1 CDCA7 gene_id:83879|Hs108|chr2 (371 aa)
initn: 937 init1: 728 opt: 739 Z-score: 657.0 bits: 130.5 E(32554): 2.8e-30
Smith-Waterman score: 957; 45.5% identity (67.4% similar) in 365 aa overlap (104-449:31-367)
80 90 100 110 120 130
pF1KB7 EDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEEEDEEEDKATPR-RS
:. :::. :..:.. . . ... :.
CCDS22 MDARRVPQKDLRVKKNLKKFRYVKLISMETSSSSDDSCDSFASDNFANTRLQSVREGCRT
10 20 30 40 50 60
140 150 160 170 180 190
pF1KB7 RSR-RSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILERKKDCRQVIQR
::. : : ::::..::... . .:.. :.:
CCDS22 RSQCRHSGPLRVAMKFPARSTRGATNKKAESRQ-------------------------PS
70 80 90
200 210 220 230 240
pF1KB7 EDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPT--SA
:.:...:..::.::: . . : ::..:::.::::::.:..::.:.: : : : :
CCDS22 ENSVTDSNSDSEDES--GMNFLEKRALNIKQNKAMLAKLMSELESFPGSFRGRHPLPGSD
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB7 SRKKTVRRAFSEGQITRRMNPTRSARPPEKF------ALENFTVSAAKFAEEFYSFRRRK
:... :: : .:: :: : ::: . .:. . . . .... :.::
CCDS22 SQSRRPRRRTFPGVASRR-NPERRARPLTRSRSRILGSLDALPMEEEEEEDKYMLVRKRK
160 170 180 190 200 210
310 320 330 340 350
pF1KB7 TIGGKCRE----YRRRHRISS-----FRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQ
:. : : :: : : .::::.::::.:::: . :.:::.. ::.::::
CCDS22 TVDGYMNEDDLPRSRRSRSSVTLPHIIRPVEEITEEELENVCSNSREKIYNRSLGSTCHQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB7 CRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYC
:::::::::: ::: : :::::::::::::::::.::.:::::.: :::::::::::.:
CCDS22 CRQKTIDTKTNCRNPDCWGVRGQFCGPCLRNRYGEEVRDALLDPNWHCPPCRGICNCSFC
280 290 300 310 320 330
420 430 440 450
pF1KB7 RKRDGRCATGILIHLAKFYGYDNVKEYLESLQKELVEDN
:.::::::::.:..:::..:. ::. ::.::..:.
CCDS22 RQRDGRCATGVLVYLAKYHGFGNVHAYLKSLKQEFEMQA
340 350 360 370
453 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:15:55 2016 done: Fri Nov 4 22:15:56 2016
Total Scan time: 3.140 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]