FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7778, 508 aa
  1>>>pF1KB7778 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3859+/-0.000972; mu= 1.2828+/- 0.058
 mean_var=248.2945+/-50.003, 0's: 0 Z-trim(113.0): 22  B-trim: 2 in 1/52
 Lambda= 0.081394
 statistics sampled from 13700 (13714) to 13700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.421), width:  16
 Scan time:  3.960

The best scores are:                                      opt bits E(32554)
CCDS4889.1 SRF gene_id:6722|Hs108|chr6             ( 508) 3229 392.2 7.2e-109


>>CCDS4889.1 SRF gene_id:6722|Hs108|chr6                  (508 aa)
 initn: 3229 init1: 3229 opt: 3229  Z-score: 2068.0  bits: 392.2 E(32554): 7.2e-109
Smith-Waterman score: 3229; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KB7 MLPTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MLPTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AAAAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AAAAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQRMSATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQRMSATG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSGPSFPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSGPSFPIT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 QVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 SGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQLHQMAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQLHQMAV
              430       440       450       460       470       480

              490       500        
pF1KB7 IGQQAGSSSNLTELQVVNLDTAHSTKSE
       ::::::::::::::::::::::::::::
CCDS48 IGQQAGSSSNLTELQVVNLDTAHSTKSE
              490       500        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:16:31 2016 done: Fri Nov  4 22:16:32 2016
 Total Scan time:  3.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]