FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7778, 508 aa
  1>>>pF1KB7778 508 - 508 aa - 508 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0018+/-0.000415; mu= -2.3992+/- 0.026
 mean_var=283.2980+/-56.613, 0's: 0 Z-trim(120.6): 63  B-trim: 13 in 2/56
 Lambda= 0.076200
 statistics sampled from 36015 (36079) to 36015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.423), width:  16
 Scan time: 11.920

The best scores are:                                      opt bits E(85289)
NP_003122 (OMIM: 600589) serum response factor iso ( 508) 3229 368.4 2.7e-101
NP_001278930 (OMIM: 600589) serum response factor  ( 304) 1922 224.6 3.3e-58


>>NP_003122 (OMIM: 600589) serum response factor isoform  (508 aa)
 initn: 3229 init1: 3229 opt: 3229  Z-score: 1939.5  bits: 368.4 E(85289): 2.7e-101
Smith-Waterman score: 3229; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KB7 MLPTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLPTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AAAAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AAAAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TGGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQRMSATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQRMSATG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSGPSFPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSGPSFPIT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQVPVQAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 QVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 SGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQLHQMAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQLHQMAV
              430       440       450       460       470       480

              490       500        
pF1KB7 IGQQAGSSSNLTELQVVNLDTAHSTKSE
       ::::::::::::::::::::::::::::
NP_003 IGQQAGSSSNLTELQVVNLDTAHSTKSE
              490       500        

>>NP_001278930 (OMIM: 600589) serum response factor isof  (304 aa)
 initn: 1922 init1: 1922 opt: 1922  Z-score: 1166.1  bits: 224.6 E(85289): 3.3e-58
Smith-Waterman score: 1922; 100.0% identity (100.0% similar) in 304 aa overlap (205-508:1-304)

          180       190       200       210       220       230    
pF1KB7 LSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQ
                                     ::::::::::::::::::::::::::::::
NP_001                               MITSETGKALIQTCLNSPDSPPRSDPTTDQ
                                             10        20        30

          240       250       260       270       280       290    
pF1KB7 RMSATGFEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMSATGFEETDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPSTSTTMQVSSG
               40        50        60        70        80        90

          300       310       320       330       340       350    
pF1KB7 PSFPITNYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSFPITNYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQ
              100       110       120       130       140       150

          360       370       380       390       400       410    
pF1KB7 VPVQAIQVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPVQAIQVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHA
              160       170       180       190       200       210

          420       430       440       450       460       470    
pF1KB7 VMYAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMYAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTASSGTVQIPVSAVQ
              220       230       240       250       260       270

          480       490       500        
pF1KB7 LHQMAVIGQQAGSSSNLTELQVVNLDTAHSTKSE
       ::::::::::::::::::::::::::::::::::
NP_001 LHQMAVIGQQAGSSSNLTELQVVNLDTAHSTKSE
              280       290       300    




508 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:16:32 2016 done: Fri Nov  4 22:16:34 2016
 Total Scan time: 11.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]