FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7822, 600 aa
  1>>>pF1KB7822 600 - 600 aa - 600 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4488+/-0.000951; mu= -1.6888+/- 0.057
 mean_var=349.8815+/-71.781, 0's: 0 Z-trim(115.6): 11  B-trim: 156 in 1/54
 Lambda= 0.068567
 statistics sampled from 16148 (16156) to 16148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.496), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(32554)
CCDS12347.1 MED26 gene_id:9441|Hs108|chr19         ( 600) 4105 419.9 4.6e-117


>>CCDS12347.1 MED26 gene_id:9441|Hs108|chr19              (600 aa)
 initn: 4105 init1: 4105 opt: 4105  Z-score: 2215.2  bits: 419.9 E(32554): 4.6e-117
Smith-Waterman score: 4105; 100.0% identity (100.0% similar) in 600 aa overlap (1-600:1-600)

               10        20        30        40        50        60
pF1KB7 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
              550       560       570       580       590       600




600 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:27:02 2016 done: Fri Nov  4 22:27:03 2016
 Total Scan time:  4.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]