FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7823, 536 aa
  1>>>pF1KB7823 536 - 536 aa - 536 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3543+/-0.000856; mu= 6.0980+/- 0.052
 mean_var=178.6985+/-35.636, 0's: 0 Z-trim(112.5): 19  B-trim: 0 in 0/52
 Lambda= 0.095943
 statistics sampled from 13249 (13262) to 13249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.407), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS9867.1 SNW1 gene_id:22938|Hs108|chr14          ( 536) 3585 508.4 8.6e-144
CCDS81830.1 SNW1 gene_id:22938|Hs108|chr14         ( 571) 3129 445.3 9.1e-125


>>CCDS9867.1 SNW1 gene_id:22938|Hs108|chr14               (536 aa)
 initn: 3585 init1: 3585 opt: 3585  Z-score: 2695.0  bits: 508.4 E(32554): 8.6e-144
Smith-Waterman score: 3585; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)

               10        20        30        40        50        60
pF1KB7 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
              430       440       450       460       470       480

              490       500       510       520       530      
pF1KB7 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
              490       500       510       520       530      

>>CCDS81830.1 SNW1 gene_id:22938|Hs108|chr14              (571 aa)
 initn: 3129 init1: 3129 opt: 3129  Z-score: 2353.5  bits: 445.3 E(32554): 9.1e-125
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)

               10        20        30        40        50        60
pF1KB7 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS81 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRCQAIQLNFS
              430       440       450       460       470       480

              490       500       510       520       530          
pF1KB7 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE    
                                                                   
CCDS81 VYTGESKVVHSFFSFSLDLFPTRSFLVQTVDREAEKDQCSLRKILLVWTSFWKKPNSMVA
              490       500       510       520       530       540




536 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:28:28 2016 done: Fri Nov  4 22:28:28 2016
 Total Scan time:  2.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]