Result of FASTA (omim) for
pF1KB7823
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7823, 536 aa
1>>>pF1KB7823 536 - 536 aa - 536 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9917+/-0.000348; mu= 8.3318+/- 0.022
mean_var=197.7500+/-39.500, 0's: 0 Z-trim(120.4): 9 B-trim: 0 in 0/58
Lambda= 0.091204
statistics sampled from 35633 (35645) to 35633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.418), width: 16
Scan time: 9.430
The best scores are: opt bits E(85289)
NP_036377 (OMIM: 603055) SNW domain-containing pro ( 536) 3585 484.2 4.2e-136
NP_001305773 (OMIM: 603055) SNW domain-containing ( 571) 3129 424.3 5e-118
XP_005267470 (OMIM: 603055) PREDICTED: SNW domain- ( 430) 2270 311.1 4.3e-84
>>NP_036377 (OMIM: 603055) SNW domain-containing protein (536 aa)
initn: 3585 init1: 3585 opt: 3585 Z-score: 2564.5 bits: 484.2 E(85289): 4.2e-136
Smith-Waterman score: 3585; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)
10 20 30 40 50 60
pF1KB7 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
490 500 510 520 530
>>NP_001305773 (OMIM: 603055) SNW domain-containing prot (571 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 2239.9 bits: 424.3 E(85289): 5e-118
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)
10 20 30 40 50 60
pF1KB7 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSG
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRCQAIQLNFS
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 SDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
NP_001 VYTGESKVVHSFFSFSLDLFPTRSFLVQTVDREAEKDQCSLRKILLVWTSFWKKPNSMVA
490 500 510 520 530 540
>>XP_005267470 (OMIM: 603055) PREDICTED: SNW domain-cont (430 aa)
initn: 2270 init1: 2270 opt: 2270 Z-score: 1630.7 bits: 311.1 E(85289): 4.3e-84
Smith-Waterman score: 2270; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)
10 20 30 40 50 60
pF1KB7 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRR
::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKGRNFREMKIGISVKLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
XP_005 LSVFLILGLPMKFSMTKGSSTNPRVWTVDLQVEKMKFIMFMIKPGEVVKIWPRVFIGPVK
370 380 390 400 410 420
536 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:28:29 2016 done: Fri Nov 4 22:28:30 2016
Total Scan time: 9.430 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]