FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7838, 614 aa
  1>>>pF1KB7838 614 - 614 aa - 614 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8080+/-0.000982; mu= -3.5467+/- 0.060
 mean_var=301.7650+/-60.659, 0's: 0 Z-trim(115.8): 125  B-trim: 60 in 2/51
 Lambda= 0.073831
 statistics sampled from 16265 (16392) to 16265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.504), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17         ( 614) 4164 456.9 3.6e-128
CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3          ( 579) 1722 196.7 6.9e-50


>>CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17              (614 aa)
 initn: 4164 init1: 4164 opt: 4164  Z-score: 2414.5  bits: 456.9 E(32554): 3.6e-128
Smith-Waterman score: 4164; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)

               10        20        30        40        50        60
pF1KB7 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 TYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 APSSYPPTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 APSSYPPTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 NMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 MVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 TAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNN
              550       560       570       580       590       600

              610    
pF1KB7 MHSEKLLSFRVDAQ
       ::::::::::::::
CCDS11 MHSEKLLSFRVDAQ
              610    

>>CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3               (579 aa)
 initn: 1836 init1: 910 opt: 1722  Z-score: 1009.1  bits: 196.7 E(32554): 6.9e-50
Smith-Waterman score: 1783; 51.3% identity (72.5% similar) in 614 aa overlap (9-611:4-577)

               10        20        30        40        50        60
pF1KB7 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
               :.::::.::.::.:.   .:: : .:..:..:::: ... :.  : : ... 
CCDS33      MEVNAGGVIAYISSSSSA---SSPASCHSEGSENSFQSSSSSVPSS-PNSSNSDT
                    10           20        30        40         50 

                70        80        90       100       110         
pF1KB7 TQDPARS-FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKST
       . .:  . ...:   :..:    : ..:.::.        ::              .:: 
CCDS33 NGNPKNGDLANIEGILKNDRIDCSMKTSKSSA--------PGM-------------TKSH
              60        70        80                             90

     120       130       140       150       160       170         
pF1KB7 SNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVR
       :..::..:::::::::::::::::::::::::::::::::::::::::.:::::::::.:
CCDS33 SGVTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMR
              100       110       120       130       140       150

     180       190       200       210       220        230        
pF1KB7 INRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMN-LANNQLSSQCPLE
       .::::::::::::::::::::::::::::::::::::: ::::::. . :.:.:..   .
CCDS33 MNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQND
              160       170       180       190       200       210

      240        250       260       270        280       290      
pF1KB7 TSPTQHP-TPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSP-SPEPTVEDVISQVARAH
       :   .:  :  :   .  : :         :. :.     :: : . . :.::..:.:::
CCDS33 TLVEHHEQTALPAQEQLRPKP---------QLEQENIKSSSPPSSDFAKEEVIGMVTRAH
              220       230                240       250       260 

        300       310       320       330       340        350     
pF1KB7 REIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLA-AQRHNEAL
       .. : : ...  .:  ... ...   :     .  ... :  . ...   . .:.:   :
CCDS33 KDTFMYNQEQQENSAESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQH---L
             270       280       290       300       310           

         360         370       380           390       400         
pF1KB7 NGLRQAPS--SYPPTWPPGPAHHSCHQ-SNSNGHRLC---PTHVYAAPEGKAPANSPRQG
       ::  .. .   ::       :.  : . ::.  .:.:   :   ..  :.:   ::   .
CCDS33 NGQFKGRNIMHYPNGHAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENK---NSYLCN
      320       330       340       350       360          370     

     410       420       430       440       450       460         
pF1KB7 NSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQV
       ..  . :.:::.  :.    .. .::::.:::::::::.:::::::.:::::::::::::
CCDS33 TGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQV
         380       390       400       410       420       430     

     470       480       490       500       510       520         
pF1KB7 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNS
       .::::::::::::::::::..:..:: :::   ::...: .:: ::::..::.::::::.
CCDS33 NLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNA
         440       450       460       470       480       490     

     530       540       550       560       570       580         
pF1KB7 LALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLL
       : :..::..::::::::::::::.::  ::: :::::.::::.:..::.: :.: :::::
CCDS33 LQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLL
         500       510       520       530       540       550     

     590       600       610    
pF1KB7 LKLPDLRTLNNMHSEKLLSFRVDAQ
       :::::::.:::::::.::.:.:   
CCDS33 LKLPDLRSLNNMHSEELLAFKVHP 
         560       570          




614 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:35:04 2016 done: Fri Nov  4 22:35:05 2016
 Total Scan time:  4.090 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]