Result of FASTA (omim) for
pF1KB7838
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7838, 614 aa
1>>>pF1KB7838 614 - 614 aa - 614 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0357+/-0.000388; mu= -4.6851+/- 0.024
mean_var=309.0121+/-64.874, 0's: 0 Z-trim(123.9): 404 B-trim: 2164 in 2/56
Lambda= 0.072960
statistics sampled from 44158 (44582) to 44158 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.523), width: 16
Scan time: 12.010
The best scores are: opt bits E(85289)
NP_068370 (OMIM: 602408) nuclear receptor subfamil ( 614) 4164 451.6 3.6e-126
NP_005117 (OMIM: 602304) nuclear receptor subfamil ( 579) 1722 194.6 8.1e-49
NP_001138897 (OMIM: 602304) nuclear receptor subfa ( 504) 1699 192.1 3.9e-48
XP_006713514 (OMIM: 602304) PREDICTED: nuclear rec ( 448) 1134 132.6 2.8e-30
XP_011532146 (OMIM: 125853,601487,601665,604367,60 ( 250) 468 62.3 2.2e-09
NP_001317544 (OMIM: 125853,601487,601665,604367,60 ( 250) 468 62.3 2.2e-09
XP_011532145 (OMIM: 125853,601487,601665,604367,60 ( 278) 468 62.4 2.4e-09
XP_011532144 (OMIM: 125853,601487,601665,604367,60 ( 445) 468 62.5 3.6e-09
XP_011532143 (OMIM: 125853,601487,601665,604367,60 ( 477) 468 62.5 3.8e-09
NP_005028 (OMIM: 125853,601487,601665,604367,60933 ( 477) 468 62.5 3.8e-09
NP_619725 (OMIM: 125853,601487,601665,604367,60933 ( 477) 468 62.5 3.8e-09
NP_619726 (OMIM: 125853,601487,601665,604367,60933 ( 477) 468 62.5 3.8e-09
NP_056953 (OMIM: 125853,601487,601665,604367,60933 ( 505) 468 62.5 4e-09
NP_599023 (OMIM: 600825) nuclear receptor ROR-alph ( 523) 462 61.9 6.3e-09
NP_803184 (OMIM: 600409) peroxisome proliferator-a ( 361) 449 60.4 1.2e-08
XP_016866464 (OMIM: 600409) PREDICTED: peroxisome ( 365) 449 60.4 1.2e-08
XP_016866461 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_016866460 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
NP_001165289 (OMIM: 600409) peroxisome proliferato ( 441) 449 60.5 1.4e-08
XP_006715183 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_011513012 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_011513011 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_016866462 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
NP_006229 (OMIM: 600409) peroxisome proliferator-a ( 441) 449 60.5 1.4e-08
XP_011513009 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_016866463 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_005249250 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_006715186 (OMIM: 600409) PREDICTED: peroxisome ( 441) 449 60.5 1.4e-08
XP_006724333 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_011528545 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_005261713 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_011528544 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_011528542 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_011528541 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_011528543 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_006724332 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
XP_005261712 (OMIM: 170998) PREDICTED: peroxisome ( 468) 446 60.2 1.9e-08
NP_005027 (OMIM: 170998) peroxisome proliferator-a ( 468) 446 60.2 1.9e-08
NP_001001928 (OMIM: 170998) peroxisome proliferato ( 468) 446 60.2 1.9e-08
NP_002934 (OMIM: 600825) nuclear receptor ROR-alph ( 548) 446 60.2 2.1e-08
XP_011520176 (OMIM: 600825) PREDICTED: nuclear rec ( 525) 442 59.8 2.7e-08
NP_001165290 (OMIM: 600409) peroxisome proliferato ( 402) 438 59.3 2.9e-08
XP_016877955 (OMIM: 600825) PREDICTED: nuclear rec ( 460) 438 59.4 3.3e-08
XP_011520177 (OMIM: 600825) PREDICTED: nuclear rec ( 504) 439 59.5 3.3e-08
XP_011520179 (OMIM: 600825) PREDICTED: nuclear rec ( 467) 438 59.4 3.3e-08
NP_599024 (OMIM: 600825) nuclear receptor ROR-alph ( 468) 438 59.4 3.3e-08
XP_005254641 (OMIM: 600825) PREDICTED: nuclear rec ( 477) 438 59.4 3.4e-08
NP_599022 (OMIM: 600825) nuclear receptor ROR-alph ( 556) 438 59.4 3.8e-08
NP_001001523 (OMIM: 602943,616622) nuclear recepto ( 497) 434 59.0 4.7e-08
NP_005051 (OMIM: 602943,616622) nuclear receptor R ( 518) 434 59.0 4.8e-08
>>NP_068370 (OMIM: 602408) nuclear receptor subfamily 1 (614 aa)
initn: 4164 init1: 4164 opt: 4164 Z-score: 2386.2 bits: 451.6 E(85289): 3.6e-126
Smith-Waterman score: 4164; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)
10 20 30 40 50 60
pF1KB7 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 TYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 APSSYPPTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 APSSYPPTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 NMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 MVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 TAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNN
550 560 570 580 590 600
610
pF1KB7 MHSEKLLSFRVDAQ
::::::::::::::
NP_068 MHSEKLLSFRVDAQ
610
>>NP_005117 (OMIM: 602304) nuclear receptor subfamily 1 (579 aa)
initn: 1836 init1: 910 opt: 1722 Z-score: 997.4 bits: 194.6 E(85289): 8.1e-49
Smith-Waterman score: 1783; 51.3% identity (72.5% similar) in 614 aa overlap (9-611:4-577)
10 20 30 40 50 60
pF1KB7 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
:.::::.::.::.:. .:: : .:..:..:::: ... :. : : ...
NP_005 MEVNAGGVIAYISSSSSA---SSPASCHSEGSENSFQSSSSSVPSS-PNSSNSDT
10 20 30 40 50
70 80 90 100 110
pF1KB7 TQDPARS-FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKST
. .: . ...: :..: : ..:.::. :: .::
NP_005 NGNPKNGDLANIEGILKNDRIDCSMKTSKSSA--------PGM-------------TKSH
60 70 80 90
120 130 140 150 160 170
pF1KB7 SNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVR
:..::..:::::::::::::::::::::::::::::::::::::::::.:::::::::.:
NP_005 SGVTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 INRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMN-LANNQLSSQCPLE
.::::::::::::::::::::::::::::::::::::: ::::::. . :.:.:.. .
NP_005 MNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQND
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 TSPTQHP-TPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSP-SPEPTVEDVISQVARAH
: .: : : . : : :. :. :: : . . :.::..:.:::
NP_005 TLVEHHEQTALPAQEQLRPKP---------QLEQENIKSSSPPSSDFAKEEVIGMVTRAH
220 230 240 250 260
300 310 320 330 340 350
pF1KB7 REIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLA-AQRHNEAL
.. : : ... .: ... ... : . ... : . ... . .:.: :
NP_005 KDTFMYNQEQQENSAESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQH---L
270 280 290 300 310
360 370 380 390 400
pF1KB7 NGLRQAPS--SYPPTWPPGPAHHSCHQ-SNSNGHRLC---PTHVYAAPEGKAPANSPRQG
:: .. . :: :. : . ::. .:.: : .. :.: :: .
NP_005 NGQFKGRNIMHYPNGHAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENK---NSYLCN
320 330 340 350 360 370
410 420 430 440 450 460
pF1KB7 NSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQV
.. . :.:::. :. .. .::::.:::::::::.:::::::.:::::::::::::
NP_005 TGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQV
380 390 400 410 420 430
470 480 490 500 510 520
pF1KB7 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNS
.::::::::::::::::::..:..:: ::: ::...: .:: ::::..::.::::::.
NP_005 NLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNA
440 450 460 470 480 490
530 540 550 560 570 580
pF1KB7 LALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLL
: :..::..::::::::::::::.:: ::: :::::.::::.:..::.: :.: :::::
NP_005 LQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLL
500 510 520 530 540 550
590 600 610
pF1KB7 LKLPDLRTLNNMHSEKLLSFRVDAQ
:::::::.:::::::.::.:.:
NP_005 LKLPDLRSLNNMHSEELLAFKVHP
560 570
>>NP_001138897 (OMIM: 602304) nuclear receptor subfamily (504 aa)
initn: 1710 init1: 910 opt: 1699 Z-score: 985.2 bits: 192.1 E(85289): 3.9e-48
Smith-Waterman score: 1699; 55.3% identity (75.2% similar) in 517 aa overlap (107-611:1-502)
80 90 100 110 120 130
pF1KB7 DDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSP--SKSTSNITKLNGMVLLCKV
:. :. .: .:: :..::..::::::::
NP_001 MKTSKSSAPGMTKSHSGVTKFSGMVLLCKV
10 20 30
140 150 160 170 180 190
pF1KB7 CGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCL
:::::::::::::::::::::::::::::::::.:::::::::.:.::::::::::::::
NP_001 CGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 SVGMSRDAVRFGRIPKREKQRMLAEMQSAMN-LANNQLSSQCPLETSPTQHP-TPGPMGP
::::::::::::::::::::::: ::::::. . :.:.:.. .: .: : :
NP_001 SVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQE
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB7 SPPPAPVPSPLVGFSQFPQQLTPPRSP-SPEPTVEDVISQVARAHREIFTYAHDKLGSSP
. : : :. :. :: : . . :.::..:.:::.. : : ... .:
NP_001 QLRPKP---------QLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSA
160 170 180 190 200
320 330 340 350 360
pF1KB7 GNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLA-AQRHNEALNGLRQAPS--SYPPT
... ... : . ... : . ... . .:.: ::: .. . ::
NP_001 ESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQH---LNGQFKGRNIMHYPNG
210 220 230 240 250
370 380 390 400 410 420
pF1KB7 WPPGPAHHSCHQ-SNSNGHRLC---PTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYP
:. : . ::. .:.: : .. :.: :: ... . :.:::. :
NP_001 HAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENK---NSYLCNTGGRMHLVCPMSKSP
260 270 280 290 300 310
430 440 450 460 470 480
pF1KB7 HGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRF
. .. .::::.:::::::::.:::::::.:::::::::::::.::::::::::::::
NP_001 YVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRF
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 ASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVV
::::..:..:: ::: ::...: .:: ::::..::.::::::.: :..::..::::::
NP_001 ASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVV
380 390 400 410 420 430
550 560 570 580 590 600
pF1KB7 LVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSE
::::::::.:: ::: :::::.::::.:..::.: :.: ::::::::::::.:::::::
NP_001 LVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSE
440 450 460 470 480 490
610
pF1KB7 KLLSFRVDAQ
.::.:.:
NP_001 ELLAFKVHP
500
>>XP_006713514 (OMIM: 602304) PREDICTED: nuclear recepto (448 aa)
initn: 1250 init1: 719 opt: 1134 Z-score: 664.5 bits: 132.6 E(85289): 2.8e-30
Smith-Waterman score: 1197; 45.9% identity (67.4% similar) in 482 aa overlap (9-479:4-445)
10 20 30 40 50 60
pF1KB7 MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
:.::::.::.::.:. .:: : .:..:..:::: ... :. : : ...
XP_006 MEVNAGGVIAYISSSSSA---SSPASCHSEGSENSFQSSSSSVPSS-PNSSNSDT
10 20 30 40 50
70 80 90 100 110
pF1KB7 TQDPARS-FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKST
. .: . ...: :..: : ..:.::. :: .::
XP_006 NGNPKNGDLANIEGILKNDRIDCSMKTSKSSA--------PGM-------------TKSH
60 70 80 90
120 130 140 150 160 170
pF1KB7 SNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVR
:..::..:::::::::::::::::::::::::::::::::::::::::.:::::::::.:
XP_006 SGVTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 INRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMN-LANNQLSSQCPLE
.::::::::::::::::::::::::::::::::::::: ::::::. . :.:.:.. .
XP_006 MNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQND
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 TSPTQHP-TPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSP-SPEPTVEDVISQVARAH
: .: : : . : : :. :. :: : . . :.::..:.:::
XP_006 TLVEHHEQTALPAQEQLRPKP---------QLEQENIKSSSPPSSDFAKEEVIGMVTRAH
220 230 240 250 260
300 310 320 330 340 350
pF1KB7 REIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLA-AQRHNEAL
.. : : ... .: ... ... : . ... : . ... . .:.: :
XP_006 KDTFMYNQEQQENSAESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQH---L
270 280 290 300 310
360 370 380 390 400
pF1KB7 NGLRQAPS--SYPPTWPPGPAHHSCHQ-SNSNGHRLC---PTHVYAAPEGKAPANSPRQG
:: .. . :: :. : . ::. .:.: : .. :.: :: .
XP_006 NGQFKGRNIMHYPNGHAICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENK---NSYLCN
320 330 340 350 360 370
410 420 430 440 450 460
pF1KB7 NSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQV
.. . :.:::. :. .. .::::.:::::::::.:::::::.:::::::::::::
XP_006 TGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQV
380 390 400 410 420 430
470 480 490 500 510 520
pF1KB7 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNS
.::::::::.
XP_006 NLLKAGTFEIDLE
440
>>XP_011532146 (OMIM: 125853,601487,601665,604367,609338 (250 aa)
initn: 465 init1: 241 opt: 468 Z-score: 289.3 bits: 62.3 E(85289): 2.2e-09
Smith-Waterman score: 468; 50.8% identity (75.0% similar) in 132 aa overlap (98-228:84-205)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
XP_011 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
XP_011 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. :
XP_011 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
XP_011 KSFPLTKAKARAILTGKTTDKSTAQVC
230 240 250
>>NP_001317544 (OMIM: 125853,601487,601665,604367,609338 (250 aa)
initn: 465 init1: 241 opt: 468 Z-score: 289.3 bits: 62.3 E(85289): 2.2e-09
Smith-Waterman score: 468; 50.8% identity (75.0% similar) in 132 aa overlap (98-228:84-205)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
NP_001 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
NP_001 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. :
NP_001 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
NP_001 KSFPLTKAKARAILTGKTTDKSTAQVC
230 240 250
>>XP_011532145 (OMIM: 125853,601487,601665,604367,609338 (278 aa)
initn: 465 init1: 241 opt: 468 Z-score: 288.6 bits: 62.4 E(85289): 2.4e-09
Smith-Waterman score: 468; 50.8% identity (75.0% similar) in 132 aa overlap (98-228:112-233)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
XP_011 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
90 100 110 120 130
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
XP_011 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. :
XP_011 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYI
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
XP_011 KSFPLTKAKARAILTGKTTDKSTAQVC
260 270
>>XP_011532144 (OMIM: 125853,601487,601665,604367,609338 (445 aa)
initn: 605 init1: 241 opt: 468 Z-score: 285.7 bits: 62.5 E(85289): 3.6e-09
Smith-Waterman score: 468; 50.8% identity (75.0% similar) in 132 aa overlap (98-228:112-233)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
XP_011 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
90 100 110 120 130
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
XP_011 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. :
XP_011 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYI
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
XP_011 KSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQ
260 270 280 290 300 310
>>XP_011532143 (OMIM: 125853,601487,601665,604367,609338 (477 aa)
initn: 806 init1: 241 opt: 468 Z-score: 285.2 bits: 62.5 E(85289): 3.8e-09
Smith-Waterman score: 591; 29.7% identity (52.7% similar) in 512 aa overlap (98-606:84-453)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
XP_011 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
XP_011 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. ::. . . ..:
XP_011 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDID----QLNPESADLRALAKHLY
170 180 190 200 210
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
. . ..:: :: .. : :.:
XP_011 DSYI----------------KSFP--LTKAKA------------------RAILT-----
220 230
310 320 330 340 350 360
pF1KB7 LGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQAPSSYP
:. .: . : :.: .
XP_011 --------------GKTTDKSPF---------VIYDMNSLMMGED---------------
240 250 260
370 380 390 400 410 420
pF1KB7 PTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYPHG
.. :. .: : .::.: . .. .:
XP_011 --------------------KIKFKHI-----------TPLQEQSKEV----AIRIF-QG
270 280
430 440 450 460 470 480
pF1KB7 RSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFAS
. :.:. ::.:..:.:: :::: .:. .::::::: :. :.... .::
XP_011 CQFRSVE------------AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLAS
290 300 310 320 330
490 500 510 520 530 540
pF1KB7 LFNVKDQTVMFLSRTTYSLQELGAM--GMGDLLSAMFDFSEKLNSLALTEEELGLFTAVV
:.: :: ... .. .. . : .. .::.. :.:. :.:.: : . .:..: ::.
XP_011 LMN-KDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVI
340 350 360 370 380 390
550 560 570 580 590 600
pF1KB7 LVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSE
..:.:: :. : .:..:..::.::. . :.: .. :.::: :. ::: . . : .
XP_011 ILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQ
400 410 420 430 440 450
610
pF1KB7 KLLSFRVDAQ
:
XP_011 LLQVIKKTETDMSLHPLLQEIYKDLY
460 470
>>NP_005028 (OMIM: 125853,601487,601665,604367,609338) p (477 aa)
initn: 806 init1: 241 opt: 468 Z-score: 285.2 bits: 62.5 E(85289): 3.8e-09
Smith-Waterman score: 591; 29.7% identity (52.7% similar) in 512 aa overlap (98-606:84-453)
70 80 90 100 110 120
pF1KB7 FGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPG-SLQVAMEDSSRVSPSKSTSNITKLN
::: : .. . .. . ::.:
NP_005 PFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSL-------
60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQ
:.. :.:::: ::::::::::::::::::::.:. .. : :: . :: : . .::.::
NP_005 -MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 QCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQHPT
:::.:::.::::..:.::::.:. ::...:::..: .. ::. . . ..:
NP_005 YCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDID----QLNPESADLRALAKHLY
170 180 190 200 210
250 260 270 280 290 300
pF1KB7 PGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTYAHDK
. . ..:: :: .. : :.:
NP_005 DSYI----------------KSFP--LTKAKA------------------RAILT-----
220 230
310 320 330 340 350 360
pF1KB7 LGSSPGNFNANHASGSPPATTPHRWENQGCPPAPNDNNTLAAQRHNEALNGLRQAPSSYP
:. .: . : :.: .
NP_005 --------------GKTTDKSPF---------VIYDMNSLMMGED---------------
240 250 260
370 380 390 400 410 420
pF1KB7 PTWPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYPHG
.. :. .: : .::.: . .. .:
NP_005 --------------------KIKFKHI-----------TPLQEQSKEV----AIRIF-QG
270 280
430 440 450 460 470 480
pF1KB7 RSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFAS
. :.:. ::.:..:.:: :::: .:. .::::::: :. :.... .::
NP_005 CQFRSVE------------AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLAS
290 300 310 320 330
490 500 510 520 530 540
pF1KB7 LFNVKDQTVMFLSRTTYSLQELGAM--GMGDLLSAMFDFSEKLNSLALTEEELGLFTAVV
:.: :: ... .. .. . : .. .::.. :.:. :.:.: : . .:..: ::.
NP_005 LMN-KDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVI
340 350 360 370 380 390
550 560 570 580 590 600
pF1KB7 LVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSE
..:.:: :. : .:..:..::.::. . :.: .. :.::: :. ::: . . : .
NP_005 ILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQ
400 410 420 430 440 450
610
pF1KB7 KLLSFRVDAQ
:
NP_005 LLQVIKKTETDMSLHPLLQEIYKDLY
460 470
614 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:35:05 2016 done: Fri Nov 4 22:35:07 2016
Total Scan time: 12.010 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]