Result of FASTA (omim) for
pF1KB7844
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7844, 587 aa
1>>>pF1KB7844 587 - 587 aa - 587 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2846+/-0.00042; mu= 4.5277+/- 0.026
mean_var=152.2282+/-30.630, 0's: 0 Z-trim(115.6): 55 B-trim: 0 in 0/55
Lambda= 0.103951
statistics sampled from 26192 (26247) to 26192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.308), width: 16
Scan time: 10.850
The best scores are: opt bits E(85289)
NP_001278675 (OMIM: 164910) proto-oncogene c-Rel i ( 587) 4001 612.4 1.4e-174
XP_011531312 (OMIM: 164910) PREDICTED: proto-oncog ( 489) 3290 505.7 1.4e-142
NP_002899 (OMIM: 164910) proto-oncogene c-Rel isof ( 619) 2178 339.0 2.8e-92
XP_016860116 (OMIM: 164910) PREDICTED: proto-oncog ( 564) 2167 337.3 8.2e-92
NP_068810 (OMIM: 164014) transcription factor p65 ( 551) 1327 211.3 6.7e-54
NP_001230914 (OMIM: 164014) transcription factor p ( 448) 1320 210.2 1.2e-53
NP_001138610 (OMIM: 164014) transcription factor p ( 548) 1305 208.0 6.6e-53
NP_001230913 (OMIM: 164014) transcription factor p ( 482) 1300 207.2 9.9e-53
XP_005259184 (OMIM: 604758) PREDICTED: transcripti ( 576) 975 158.5 5.4e-38
NP_006500 (OMIM: 604758) transcription factor RelB ( 579) 975 158.5 5.4e-38
XP_011543508 (OMIM: 164014) PREDICTED: transcripti ( 480) 959 156.1 2.4e-37
XP_011543509 (OMIM: 164014) PREDICTED: transcripti ( 445) 741 123.4 1.6e-27
XP_005259185 (OMIM: 604758) PREDICTED: transcripti ( 507) 712 119.1 3.6e-26
XP_011538132 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 523 90.8 1.7e-17
XP_011538133 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 523 90.8 1.7e-17
NP_001248332 (OMIM: 164012,615577) nuclear factor ( 899) 523 90.8 2e-17
NP_002493 (OMIM: 164012,615577) nuclear factor NF- ( 899) 523 90.8 2e-17
NP_001275653 (OMIM: 164012,615577) nuclear factor ( 899) 523 90.8 2e-17
NP_001309863 (OMIM: 164012,615577) nuclear factor ( 900) 523 90.8 2e-17
NP_001070962 (OMIM: 164012,615577) nuclear factor ( 900) 523 90.8 2e-17
XP_016871767 (OMIM: 164012,615577) PREDICTED: nucl (1081) 523 90.9 2.4e-17
NP_001309864 (OMIM: 164012,615577) nuclear factor ( 858) 507 88.4 1e-16
NP_001306155 (OMIM: 164011,616576) nuclear factor ( 968) 362 66.7 4e-10
NP_001158884 (OMIM: 164011,616576) nuclear factor ( 968) 362 66.7 4e-10
XP_011530308 (OMIM: 164011,616576) PREDICTED: nucl ( 976) 362 66.7 4e-10
XP_011530310 (OMIM: 164011,616576) PREDICTED: nucl ( 916) 360 66.4 4.7e-10
NP_003989 (OMIM: 164011,616576) nuclear factor NF- ( 969) 360 66.4 4.9e-10
>>NP_001278675 (OMIM: 164910) proto-oncogene c-Rel isofo (587 aa)
initn: 4001 init1: 4001 opt: 4001 Z-score: 3255.5 bits: 612.4 E(85289): 1.4e-174
Smith-Waterman score: 4001; 100.0% identity (100.0% similar) in 587 aa overlap (1-587:1-587)
10 20 30 40 50 60
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QKLCQDHVNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKLCQDHVNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 PISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 NDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADN
490 500 510 520 530 540
550 560 570 580
pF1KB7 SMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
550 560 570 580
>>XP_011531312 (OMIM: 164910) PREDICTED: proto-oncogene (489 aa)
initn: 3290 init1: 3290 opt: 3290 Z-score: 2680.5 bits: 505.7 E(85289): 1.4e-142
Smith-Waterman score: 3290; 99.8% identity (99.8% similar) in 488 aa overlap (100-587:2-489)
70 80 90 100 110 120
pF1KB7 DPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRIKAGINP
: ::::::::::::::::::::::::::::
XP_011 MLCFQNLGIRCVKKKEVKEAIITRIKAGINP
10 20 30
130 140 150 160 170 180
pF1KB7 FNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRIC
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB7 RVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPY
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB7 CKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKLCQDHVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKLCQDHVN
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB7 FPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHH
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB7 ASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNAC
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB7 IYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLEN
340 350 360 370 380 390
490 500 510 520 530 540
pF1KB7 PSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPS
400 410 420 430 440 450
550 560 570 580
pF1KB7 NSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
::::::::::::::::::::::::::::::::::::::
XP_011 NSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
460 470 480
>>NP_002899 (OMIM: 164910) proto-oncogene c-Rel isoform (619 aa)
initn: 2120 init1: 2120 opt: 2178 Z-score: 1777.6 bits: 339.0 E(85289): 2.8e-92
Smith-Waterman score: 3927; 94.8% identity (94.8% similar) in 619 aa overlap (1-587:1-619)
10 20 30 40 50 60
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
250 260 270 280 290 300
310 320
pF1KB7 QKLCQDHV--------------------------------NFPERPRPGLLGSIGEGRYF
:::::::: ::::::::::::::::::::
NP_002 QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYF
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB7 DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS
490 500 510 520 530 540
510 520 530 540 550 560
pF1KB7 SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI
550 560 570 580 590 600
570 580
pF1KB7 GSMQNEQLSDSFPYEFFQV
:::::::::::::::::::
NP_002 GSMQNEQLSDSFPYEFFQV
610
>>XP_016860116 (OMIM: 164910) PREDICTED: proto-oncogene (564 aa)
initn: 3824 init1: 2115 opt: 2167 Z-score: 1769.3 bits: 337.3 E(85289): 8.2e-92
Smith-Waterman score: 3782; 96.1% identity (96.1% similar) in 587 aa overlap (1-587:1-564)
10 20 30 40 50 60
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QKLCQDHVNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPG
::::::: ::::::::::::::::::::::::::::::
XP_016 QKLCQDH-----------------------EPNLFSHDAVVREMPTGVSSQAESYYPSPG
310 320 330
370 380 390 400 410 420
pF1KB7 PISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVG
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB7 NDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNP
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB7 RLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADN
460 470 480 490 500 510
550 560 570 580
pF1KB7 SMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV
520 530 540 550 560
>>NP_068810 (OMIM: 164014) transcription factor p65 isof (551 aa)
initn: 1095 init1: 613 opt: 1327 Z-score: 1088.7 bits: 211.3 E(85289): 6.7e-54
Smith-Waterman score: 1327; 46.9% identity (70.7% similar) in 461 aa overlap (5-461:16-465)
10 20 30 40
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPS
: .::.::::::.:::::::::::::::::::::.:::...:.:.
NP_068 MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 IQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRC
:.: .: : : :::.::::. :..::::.:::::::::.::::. .: ::::::.:
NP_068 IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 VKKKEVKEAIITRIKAGINPFNVP-EKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALP
:::.....:: ::... :::.:: :.: .: :::.::::::: . : : ::
NP_068 VKKRDLEQAISQRIQTNNNPFQVPIEEQRGDY---DLNAVRLCFQVTVRDPSGR-PLRLP
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 PVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAK
::.:.::.::::::::::.:::::.: :: ::::::::::::::.:::: :. :::.
NP_068 PVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEAR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 GIFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTY
: ::::::::::::::.:::: .. :: :.::::::::.:.:: :.:.:::: : .
NP_068 GSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 GNKAKKQKTTLLFQKLCQDH-VNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPT
. :...: :... . . : ::: .: . :. . . .
NP_068 RIEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQP---YPFTS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 GVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPS
..:. . .:. :. .:. ...:: : . .. :.: . .. :.. . .:
NP_068 SLSTINYDEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQ-APAPVPV
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 NSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGIS-DPNMLSNCSVN
. : : . :. . .:... . .. .. .. .. . : : : :: ....
NP_068 LAPGPPQAVAPPAPKPTQAGEGTL---SEALLQLQFDDEDLGALLGNSTDPAVFTDLASV
420 430 440 450 460
470 480 490 500 510 520
pF1KB7 MMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVS
NP_068 DNSEFQQLLNQGIPVAPHTTEPMLMEYPEAITRLVTGAQRPPDPAPAPLGAPGLPNGLLS
470 480 490 500 510 520
>>NP_001230914 (OMIM: 164014) transcription factor p65 i (448 aa)
initn: 1095 init1: 613 opt: 1320 Z-score: 1084.4 bits: 210.2 E(85289): 1.2e-53
Smith-Waterman score: 1320; 50.6% identity (72.4% similar) in 413 aa overlap (5-412:16-421)
10 20 30 40
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPS
: .::.::::::.:::::::::::::::::::::.:::...:.:.
NP_001 MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 IQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRC
:.: .: : : :::.::::. :..::::.:::::::::.::::. .: ::::::.:
NP_001 IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 VKKKEVKEAIITRIKAGINPFNVP-EKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALP
:::.....:: ::... :::.:: :.: .: :::.::::::: . : : ::
NP_001 VKKRDLEQAISQRIQTNNNPFQVPIEEQRGDY---DLNAVRLCFQVTVRDPSGR-PLRLP
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 PVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAK
::.:.::.::::::::::.:::::.: :: ::::::::::::::.:::: :. :::.
NP_001 PVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEAR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 GIFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTY
: ::::::::::::::.:::: .. :: :.::::::::.:.:: :.:.:::: : .
NP_001 GSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 GNKAKKQKTTLLFQKLCQDH-VNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPT
. :...: :... . . : ::: .: . :. . . .
NP_001 RIEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQP---YPFTS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 GVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPS
..:. . .:. :. .:. ...:: : . .. :.: . .. :.. :.
NP_001 SLSTINYDEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQRPPDPAPA
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 --NSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSV
.. :.:
NP_001 PLGAPGLPNGLLSGDEDFSSIADMDFSALLSQISS
420 430 440
>>NP_001138610 (OMIM: 164014) transcription factor p65 i (548 aa)
initn: 1083 init1: 601 opt: 1305 Z-score: 1070.9 bits: 208.0 E(85289): 6.6e-53
Smith-Waterman score: 1310; 46.5% identity (70.4% similar) in 460 aa overlap (5-461:16-462)
10 20 30 40
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPS
: .::.::::::.:::::::::::::::::::::.:::...:.:.
NP_001 MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 IQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRC
:.: .: : : :::.::::. :..::::.:::::::::.::::. .: ::::::.:
NP_001 IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 VKKKEVKEAIITRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPP
:::.....:: ::... :::. :.: .: :::.::::::: . : : :::
NP_001 VKKRDLEQAISQRIQTNNNPFQ--EEQRGDY---DLNAVRLCFQVTVRDPSGR-PLRLPP
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 VVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKG
:.:.::.::::::::::.:::::.: :: ::::::::::::::.:::: :. :::.:
NP_001 VLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 IFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYG
::::::::::::::.:::: .. :: :.::::::::.:.:: :.:.:::: : .
NP_001 SFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHR
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 NKAKKQKTTLLFQKLCQDH-VNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTG
. :...: :... . . : ::: .: . :. . . ..
NP_001 IEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQP---YPFTSS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 VSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSN
.:. . .:. :. .:. ...:: : . .. :.: . .. :.. . .:
NP_001 LSTINYDEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQ-APAPVPVL
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 SQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGIS-DPNMLSNCSVNM
. : : . :. . .:... . .. .. .. .. . : : : :: ....
NP_001 APGPPQAVAPPAPKPTQAGEGTL---SEALLQLQFDDEDLGALLGNSTDPAVFTDLASVD
420 430 440 450 460
470 480 490 500 510 520
pF1KB7 MTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQ
NP_001 NSEFQQLLNQGIPVAPHTTEPMLMEYPEAITRLVTGAQRPPDPAPAPLGAPGLPNGLLSG
470 480 490 500 510 520
>>NP_001230913 (OMIM: 164014) transcription factor p65 i (482 aa)
initn: 1230 init1: 613 opt: 1300 Z-score: 1067.7 bits: 207.2 E(85289): 9.9e-53
Smith-Waterman score: 1300; 61.6% identity (80.3% similar) in 315 aa overlap (5-316:16-326)
10 20 30 40
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPS
: .::.::::::.:::::::::::::::::::::.:::...:.:.
NP_001 MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 IQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRC
:.: .: : : :::.::::. :..::::.:::::::::.::::. .: ::::::.:
NP_001 IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 VKKKEVKEAIITRIKAGINPFNVP-EKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALP
:::.....:: ::... :::.:: :.: .: :::.::::::: . : : ::
NP_001 VKKRDLEQAISQRIQTNNNPFQVPIEEQRGDY---DLNAVRLCFQVTVRDPSGR-PLRLP
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 PVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAK
::.:.::.::::::::::.:::::.: :: ::::::::::::::.:::: :. :::.
NP_001 PVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEAR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 GIFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTY
: ::::::::::::::.:::: .. :: :.::::::::.:.:: :.:.:::: : .
NP_001 GSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 GNKAKKQKTTLLFQKLCQDH-VNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPT
. :...: :... . . : :::
NP_001 RIEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPGPPQAVAPPA
300 310 320 330 340 350
>>XP_005259184 (OMIM: 604758) PREDICTED: transcription f (576 aa)
initn: 557 init1: 457 opt: 975 Z-score: 803.1 bits: 158.5 E(85289): 5.4e-38
Smith-Waterman score: 975; 50.3% identity (76.4% similar) in 292 aa overlap (8-295:122-410)
10 20 30
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPG
:.. : :::.::::::::.::::::::: :
XP_005 LGPVAPPATPPPWGCPLGRLVSPAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILG
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB7 EHSTDNNRTYPSIQIMNYYGKGKVRIT--LVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQ
: ::. ..: :.:.. . : .:..: :: :. :.. :::.:::::: :: ....
XP_005 ESSTEASKTLPAIELRDCGGLREVEVTACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRP
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 ERRPLF-FQNLGIRCVKKKEVKEAIITRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQV
. : :.::::.::.:::.. :: .:. ::.:.:. .:.. .. :.::::.:::.
XP_005 HVSPRHSFNNLGIQCVRKKEIEAAIERKIQLGIDPYNAG--SLKNHQEVDMNVVRICFQA
220 230 240 250 260
160 170 180 190 200 210
pF1KB7 FLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKD
:..:.. . ::.:.:.::... ::.::::::.::. : ::.:..::::::::.
XP_005 SYRDQQGQMRR-MDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKE
270 280 290 300 310 320
220 230 240 250 260 270
pF1KB7 DIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSE
:: : : .::... :::::::::.::::::::: :.:::::.. :.: .: ::
XP_005 DISVVFSRASWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSE
330 340 350 360 370 380
280 290 300 310 320 330
pF1KB7 SMDFRYLPDEKDTYGNKAKKQKTTLLFQKLCQDHVNFPERPRPGLLGSIGEGRYFKKEPN
. : ::: ..:.:: :...
XP_005 PLPFTYLPRDHDSYGVDKKRKRGMPDVLGELNSSDPHGIESKRRKKKPAILDHFLPNHGS
390 400 410 420 430 440
>>NP_006500 (OMIM: 604758) transcription factor RelB [Ho (579 aa)
initn: 557 init1: 457 opt: 975 Z-score: 803.0 bits: 158.5 E(85289): 5.4e-38
Smith-Waterman score: 975; 50.3% identity (76.4% similar) in 292 aa overlap (8-295:125-413)
10 20 30
pF1KB7 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPG
:.. : :::.::::::::.::::::::: :
NP_006 LGPVAPPATPPPWGCPLGRLVSPAPGPGPQPHLVITEQPKQRGMRFRYECEGRSAGSILG
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB7 EHSTDNNRTYPSIQIMNYYGKGKVRIT--LVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQ
: ::. ..: :.:.. . : .:..: :: :. :.. :::.:::::: :: ....
NP_006 ESSTEASKTLPAIELRDCGGLREVEVTACLVWKDWPHRVHPHSLVGKDCTDGICRVRLRP
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 ERRPLF-FQNLGIRCVKKKEVKEAIITRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQV
. : :.::::.::.:::.. :: .:. ::.:.:. .:.. .. :.::::.:::.
NP_006 HVSPRHSFNNLGIQCVRKKEIEAAIERKIQLGIDPYNAG--SLKNHQEVDMNVVRICFQA
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB7 FLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKD
:..:.. . ::.:.:.::... ::.::::::.::. : ::.:..::::::::.
NP_006 SYRDQQGQMRR-MDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKE
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB7 DIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPYCK-AITEPVTVKMQLRRPSDQEVSE
:: : : .::... :::::::::.::::::::: :.:::::.. :.: .: ::
NP_006 DISVVFSRASWEGRADFSQADVHRQIAIVFKTPPYEDLEIVEPVTVNVFLQRLTDGVCSE
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB7 SMDFRYLPDEKDTYGNKAKKQKTTLLFQKLCQDHVNFPERPRPGLLGSIGEGRYFKKEPN
. : ::: ..:.:: :...
NP_006 PLPFTYLPRDHDSYGVDKKRKRGMPDVLGELNSSDPHGIESKRRKKKPAILDHFLPNHGS
400 410 420 430 440 450
587 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:36:23 2016 done: Fri Nov 4 22:36:25 2016
Total Scan time: 10.850 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]