FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7886, 651 aa
  1>>>pF1KB7886 651 - 651 aa - 651 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8111+/-0.000955; mu= 16.5061+/- 0.057
 mean_var=66.0349+/-13.198, 0's: 0 Z-trim(105.1): 21  B-trim: 334 in 1/52
 Lambda= 0.157829
 statistics sampled from 8254 (8258) to 8254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.254), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS10559.1 RRN3 gene_id:54700|Hs108|chr16         ( 651) 4351 999.9       0
CCDS73833.1 RRN3 gene_id:54700|Hs108|chr16         ( 621) 3636 837.1       0


>>CCDS10559.1 RRN3 gene_id:54700|Hs108|chr16              (651 aa)
 initn: 4351 init1: 4351 opt: 4351  Z-score: 5348.4  bits: 999.9 E(32554):    0
Smith-Waterman score: 4351; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KB7 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KB7 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
              610       620       630       640       650 

>>CCDS73833.1 RRN3 gene_id:54700|Hs108|chr16              (621 aa)
 initn: 3626 init1: 3626 opt: 3636  Z-score: 4468.8  bits: 837.1 E(32554):    0
Smith-Waterman score: 4090; 95.4% identity (95.4% similar) in 651 aa overlap (1-651:1-621)

               10        20        30        40        50        60
pF1KB7 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LKYKKGETNDFELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLN
       ::::::::::::::::::::::::                              ::::::
CCDS73 LKYKKGETNDFELLKNQLLDPDIK------------------------------RLPWLN
               70        80                                      90

              130       140       150       160       170       180
pF1KB7 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLP
              100       110       120       130       140       150

              190       200       210       220       230       240
pF1KB7 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLR
              160       170       180       190       200       210

              250       260       270       280       290       300
pF1KB7 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKAGP
              220       230       240       250       260       270

              310       320       330       340       350       360
pF1KB7 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHA
              280       290       300       310       320       330

              370       380       390       400       410       420
pF1KB7 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
              340       350       360       370       380       390

              430       440       450       460       470       480
pF1KB7 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK
              400       410       420       430       440       450

              490       500       510       520       530       540
pF1KB7 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI
              460       470       480       490       500       510

              550       560       570       580       590       600
pF1KB7 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDI
              520       530       540       550       560       570

              610       620       630       640       650 
pF1KB7 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VEDEDDDFLKGEVPQNDTVIGITPSSFDTHFRSPSSSVGSPPVLYMQPSPL
              580       590       600       610       620 




651 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:21:14 2016 done: Sat Nov  5 16:21:14 2016
 Total Scan time:  3.620 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]