FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7888, 651 aa
  1>>>pF1KB7888 651 - 651 aa - 651 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9390+/-0.000938; mu= 16.6365+/- 0.057
 mean_var=77.9635+/-15.132, 0's: 0 Z-trim(106.5): 16  B-trim: 0 in 0/50
 Lambda= 0.145254
 statistics sampled from 9034 (9038) to 9034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.278), width:  16
 Scan time:  3.830

The best scores are:                                      opt bits E(32554)
CCDS8295.1 MED17 gene_id:9440|Hs108|chr11          ( 651) 4307 912.4       0


>>CCDS8295.1 MED17 gene_id:9440|Hs108|chr11               (651 aa)
 initn: 4307 init1: 4307 opt: 4307  Z-score: 4875.4  bits: 912.4 E(32554):    0
Smith-Waterman score: 4307; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KB7 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KB7 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL
              610       620       630       640       650 




651 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:17:16 2016 done: Fri Nov  4 21:17:16 2016
 Total Scan time:  3.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]