FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7888, 651 aa 1>>>pF1KB7888 651 - 651 aa - 651 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9390+/-0.000938; mu= 16.6365+/- 0.057 mean_var=77.9635+/-15.132, 0's: 0 Z-trim(106.5): 16 B-trim: 0 in 0/50 Lambda= 0.145254 statistics sampled from 9034 (9038) to 9034 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.278), width: 16 Scan time: 3.830 The best scores are: opt bits E(32554) CCDS8295.1 MED17 gene_id:9440|Hs108|chr11 ( 651) 4307 912.4 0 >>CCDS8295.1 MED17 gene_id:9440|Hs108|chr11 (651 aa) initn: 4307 init1: 4307 opt: 4307 Z-score: 4875.4 bits: 912.4 E(32554): 0 Smith-Waterman score: 4307; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651) 10 20 30 40 50 60 pF1KB7 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB7 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB7 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB7 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ 550 560 570 580 590 600 610 620 630 640 650 pF1KB7 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL 610 620 630 640 650 651 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 21:17:16 2016 done: Fri Nov 4 21:17:16 2016 Total Scan time: 3.830 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]