FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7888, 651 aa
  1>>>pF1KB7888 651 - 651 aa - 651 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6638+/-0.000383; mu= 18.6786+/- 0.024
 mean_var=88.1020+/-17.947, 0's: 0 Z-trim(113.9): 27  B-trim: 259 in 1/53
 Lambda= 0.136641
 statistics sampled from 23485 (23492) to 23485 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.275), width:  16
 Scan time: 11.210

The best scores are:                                      opt bits E(85289)
NP_004259 (OMIM: 603810,613668) mediator of RNA po ( 651) 4307 859.5       0
XP_011541370 (OMIM: 603810,613668) PREDICTED: medi ( 652) 3469 694.3 3.5e-199


>>NP_004259 (OMIM: 603810,613668) mediator of RNA polyme  (651 aa)
 initn: 4307 init1: 4307 opt: 4307  Z-score: 4589.7  bits: 859.5 E(85289):    0
Smith-Waterman score: 4307; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KB7 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KB7 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL
              610       620       630       640       650 

>>XP_011541370 (OMIM: 603810,613668) PREDICTED: mediator  (652 aa)
 initn: 3469 init1: 3469 opt: 3469  Z-score: 3696.9  bits: 694.3 E(85289): 3.5e-199
Smith-Waterman score: 3469; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)

               10        20        30        40        50        60
pF1KB7 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::            
XP_011 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQFVMDLKVAARLW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
                                                                   
XP_011 FSFLVTNVKTFQKVMFYKITNGVIFVGHSKKFSGIKWKVEILFIKWSCLCLHLALVYYDF
              550       560       570       580       590       600




651 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:17:17 2016 done: Fri Nov  4 21:17:18 2016
 Total Scan time: 11.210 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]