FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7907, 131 aa
  1>>>pF1KB7907 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9531+/-0.000765; mu= 7.3102+/- 0.046
 mean_var=67.3136+/-13.295, 0's: 0 Z-trim(108.4): 13  B-trim: 0 in 0/50
 Lambda= 0.156323
 statistics sampled from 10179 (10182) to 10179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.313), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS11078.1 MED31 gene_id:51003|Hs108|chr17        ( 131)  896 210.5 2.5e-55


>>CCDS11078.1 MED31 gene_id:51003|Hs108|chr17             (131 aa)
 initn: 896 init1: 896 opt: 896  Z-score: 1106.9  bits: 210.5 E(32554): 2.5e-55
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB7 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA
               70        80        90       100       110       120

              130 
pF1KB7 EQQQQNNTSGK
       :::::::::::
CCDS11 EQQQQNNTSGK
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:08:57 2016 done: Sat Nov  5 10:08:57 2016
 Total Scan time:  1.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]