Result of FASTA (ccds) for
pF1KB7918
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7918, 346 aa
1>>>pF1KB7918 346 - 346 aa - 346 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6857+/-0.000812; mu= 8.2205+/- 0.050
mean_var=165.5357+/-32.876, 0's: 0 Z-trim(113.9): 46 B-trim: 0 in 0/51
Lambda= 0.099685
statistics sampled from 14486 (14531) to 14486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.446), width: 16
Scan time: 3.150
The best scores are: opt bits E(32554)
CCDS12452.1 USF2 gene_id:7392|Hs108|chr19 ( 346) 2271 337.8 7.9e-93
CCDS12453.1 USF2 gene_id:7392|Hs108|chr19 ( 279) 1332 202.7 3e-52
CCDS82329.1 USF2 gene_id:7392|Hs108|chr19 ( 215) 937 145.8 3.1e-35
CCDS1214.1 USF1 gene_id:7391|Hs108|chr1 ( 310) 756 119.9 2.8e-27
>>CCDS12452.1 USF2 gene_id:7392|Hs108|chr19 (346 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 1780.1 bits: 337.8 E(32554): 7.9e-93
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
250 260 270 280 290 300
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
310 320 330 340
>>CCDS12453.1 USF2 gene_id:7392|Hs108|chr19 (279 aa)
initn: 1332 init1: 1332 opt: 1332 Z-score: 1051.5 bits: 202.7 E(32554): 3e-52
Smith-Waterman score: 1688; 80.6% identity (80.6% similar) in 346 aa overlap (1-346:1-279)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::
CCDS12 DHNIQYQFRTETNGGQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
:::::::::::::::::::::::::::::::::::::
CCDS12 -----------------------AVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
80 90 100 110
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
180 190 200 210 220 230
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
240 250 260 270
>>CCDS82329.1 USF2 gene_id:7392|Hs108|chr19 (215 aa)
initn: 928 init1: 928 opt: 937 Z-score: 746.1 bits: 145.8 E(32554): 3.1e-35
Smith-Waterman score: 1149; 62.1% identity (62.1% similar) in 346 aa overlap (1-346:1-215)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::
CCDS82 DHNIQYQFRTETNGGQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
CCDS82 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
:::::::::::::::::::::::::::::::::
CCDS82 ---------------------------TGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
80 90 100
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
110 120 130 140 150 160
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
170 180 190 200 210
>>CCDS1214.1 USF1 gene_id:7391|Hs108|chr1 (310 aa)
initn: 1000 init1: 749 opt: 756 Z-score: 603.2 bits: 119.9 E(32554): 2.8e-27
Smith-Waterman score: 1005; 51.8% identity (74.4% similar) in 336 aa overlap (22-340:4-304)
10 20 30 40 50
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
..: :.::: :..:::. . : :. :.:::.:.:.::
CCDS12 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
10 20 30 40
60 70 80 90 100 110
pF1KB7 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
: : :..: :::: ::::: :::.::..:::::: . .::.: :
CCDS12 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAIS-----------------G
50 60 70 80
120 130 140 150 160 170
pF1KB7 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
::. :. ::::. :.. . .:....:....:::...:::
CCDS12 Y--------PATQSMTQ--------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
90 100 110 120
180 190 200 210 220
pF1KB7 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
CCDS12 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB7 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
CCDS12 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
190 200 210 220 230 240
290 300 310 320 330 340
pF1KB7 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::..:.::.:
CCDS12 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
250 260 270 280 290 300
pF1KB7 TRQ
CCDS12 DSN
310
346 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:56:04 2016 done: Sat Nov 5 01:56:04 2016
Total Scan time: 3.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]