Result of FASTA (omim) for
pF1KB7918
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7918, 346 aa
1>>>pF1KB7918 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6087+/-0.000327; mu= 8.8253+/- 0.021
mean_var=186.0424+/-37.662, 0's: 0 Z-trim(121.4): 89 B-trim: 0 in 0/56
Lambda= 0.094030
statistics sampled from 37904 (38046) to 37904 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.446), width: 16
Scan time: 9.360
The best scores are: opt bits E(85289)
NP_003358 (OMIM: 600390) upstream stimulatory fact ( 346) 2271 319.7 5.8e-87
XP_005259254 (OMIM: 600390) PREDICTED: upstream st ( 351) 2093 295.6 1.1e-79
XP_011525563 (OMIM: 600390) PREDICTED: upstream st ( 244) 1598 228.3 1.4e-59
XP_011525562 (OMIM: 600390) PREDICTED: upstream st ( 258) 1596 228.0 1.7e-59
NP_997174 (OMIM: 600390) upstream stimulatory fact ( 279) 1332 192.2 1.1e-48
XP_016882688 (OMIM: 600390) PREDICTED: upstream st ( 284) 1154 168.1 2.1e-41
NP_001308079 (OMIM: 600390) upstream stimulatory f ( 215) 937 138.6 1.2e-32
NP_996888 (OMIM: 191523,602491) upstream stimulato ( 251) 756 114.1 3.4e-25
NP_009053 (OMIM: 191523,602491) upstream stimulato ( 310) 756 114.1 4e-25
NP_001263302 (OMIM: 191523,602491) upstream stimul ( 310) 756 114.1 4e-25
>>NP_003358 (OMIM: 600390) upstream stimulatory factor 2 (346 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 1682.2 bits: 319.7 E(85289): 5.8e-87
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
250 260 270 280 290 300
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
310 320 330 340
>>XP_005259254 (OMIM: 600390) PREDICTED: upstream stimul (351 aa)
initn: 2121 init1: 2093 opt: 2093 Z-score: 1551.6 bits: 295.6 E(85289): 1.1e-79
Smith-Waterman score: 2093; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
250 260 270 280 290 300
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
:::::::::::::::::.
XP_005 FKEAERLQMDNELLRQQVGAGPGAGQGPGAPDARRWPSAPLTSVVSARSRS
310 320 330 340 350
>>XP_011525563 (OMIM: 600390) PREDICTED: upstream stimul (244 aa)
initn: 1598 init1: 1598 opt: 1598 Z-score: 1190.7 bits: 228.3 E(85289): 1.4e-59
Smith-Waterman score: 1598; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
:::
XP_011 NEVP
>>XP_011525562 (OMIM: 600390) PREDICTED: upstream stimul (258 aa)
initn: 1593 init1: 1593 opt: 1596 Z-score: 1189.0 bits: 228.0 E(85289): 1.7e-59
Smith-Waterman score: 1596; 95.7% identity (96.5% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
:: : .:.
XP_011 NEGLWSRWGLHCSWVSLG
250
>>NP_997174 (OMIM: 600390) upstream stimulatory factor 2 (279 aa)
initn: 1332 init1: 1332 opt: 1332 Z-score: 995.0 bits: 192.2 E(85289): 1.1e-48
Smith-Waterman score: 1688; 80.6% identity (80.6% similar) in 346 aa overlap (1-346:1-279)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::
NP_997 DHNIQYQFRTETNGGQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
:::::::::::::::::::::::::::::::::::::
NP_997 -----------------------AVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
80 90 100 110
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
180 190 200 210 220 230
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
NP_997 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
240 250 260 270
>>XP_016882688 (OMIM: 600390) PREDICTED: upstream stimul (284 aa)
initn: 1650 init1: 1154 opt: 1154 Z-score: 864.4 bits: 168.1 E(85289): 2.1e-41
Smith-Waterman score: 1510; 78.6% identity (78.9% similar) in 318 aa overlap (1-318:1-251)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::
XP_016 DHNIQYQFRTETNGGQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
:::::::::::::::::::::::::::::::::::::
XP_016 -----------------------AVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
80 90 100 110
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
180 190 200 210 220 230
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
:::::::::::::::::.
XP_016 FKEAERLQMDNELLRQQVGAGPGAGQGPGAPDARRWPSAPLTSVVSARSRS
240 250 260 270 280
>>NP_001308079 (OMIM: 600390) upstream stimulatory facto (215 aa)
initn: 928 init1: 928 opt: 937 Z-score: 706.8 bits: 138.6 E(85289): 1.2e-32
Smith-Waterman score: 1149; 62.1% identity (62.1% similar) in 346 aa overlap (1-346:1-215)
10 20 30 40 50 60
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVD
::::::::::::::::
NP_001 DHNIQYQFRTETNGGQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB7 GAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTA
NP_001 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB7 VSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
:::::::::::::::::::::::::::::::::
NP_001 ---------------------------TGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQH
80 90 100
250 260 270 280 290 300
pF1KB7 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQET
110 120 130 140 150 160
310 320 330 340
pF1KB7 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
170 180 190 200 210
>>NP_996888 (OMIM: 191523,602491) upstream stimulatory f (251 aa)
initn: 918 init1: 749 opt: 756 Z-score: 573.3 bits: 114.1 E(85289): 3.4e-25
Smith-Waterman score: 846; 51.3% identity (73.6% similar) in 277 aa overlap (79-340:2-245)
50 60 70 80 90 100
pF1KB7 VAITSVQQAAFGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFA
:::.::..:::::: . .::.:
NP_996 MYRVIQVSEGQLDGQTEGTGAIS--------
10 20
110 120 130 140 150 160
pF1KB7 GGQQAVTQVGVDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFA
: ::. :. ::::. :.. . .:....:....
NP_996 -GY----------------PATQSMTQ--------AVIQGAFTSDDAVDTEGTAAETHYT
30 40 50
170 180 190 200 210
pF1KB7 YFPASSVGD--------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRT
:::...::: .:: :..: .. :. : :::.:::.::.::: :.::.
NP_996 YFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRS
60 70 80 90 100 110
220 230 240 250 260 270
pF1KB7 IAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTG
::::::::::: .. :: :::.::::::::::::::::::::::::::::::. ...:.:
NP_996 IAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSG
120 130 140 150 160 170
280 290 300 310 320 330
pF1KB7 ASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQ
:::::::::::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::.
NP_996 QSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLR
180 190 200 210 220 230
340
pF1KB7 QHNLEMVGEGTRQ
.:.::.:
NP_996 HHGLEVVIKNDSN
240 250
>>NP_009053 (OMIM: 191523,602491) upstream stimulatory f (310 aa)
initn: 1000 init1: 749 opt: 756 Z-score: 572.1 bits: 114.1 E(85289): 4e-25
Smith-Waterman score: 1005; 51.8% identity (74.4% similar) in 336 aa overlap (22-340:4-304)
10 20 30 40 50
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
..: :.::: :..:::. . : :. :.:::.:.:.::
NP_009 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
10 20 30 40
60 70 80 90 100 110
pF1KB7 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
: : :..: :::: ::::: :::.::..:::::: . .::.: :
NP_009 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAIS-----------------G
50 60 70 80
120 130 140 150 160 170
pF1KB7 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
::. :. ::::. :.. . .:....:....:::...:::
NP_009 Y--------PATQSMTQ--------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
90 100 110 120
180 190 200 210 220
pF1KB7 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
NP_009 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB7 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
NP_009 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
190 200 210 220 230 240
290 300 310 320 330 340
pF1KB7 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::..:.::.:
NP_009 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
250 260 270 280 290 300
pF1KB7 TRQ
NP_009 DSN
310
>>NP_001263302 (OMIM: 191523,602491) upstream stimulator (310 aa)
initn: 1000 init1: 749 opt: 756 Z-score: 572.1 bits: 114.1 E(85289): 4e-25
Smith-Waterman score: 1005; 51.8% identity (74.4% similar) in 336 aa overlap (22-340:4-304)
10 20 30 40 50
pF1KB7 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
..: :.::: :..:::. . : :. :.:::.:.:.::
NP_001 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
10 20 30 40
60 70 80 90 100 110
pF1KB7 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
: : :..: :::: ::::: :::.::..:::::: . .::.: :
NP_001 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAIS-----------------G
50 60 70 80
120 130 140 150 160 170
pF1KB7 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
::. :. ::::. :.. . .:....:....:::...:::
NP_001 Y--------PATQSMTQ--------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
90 100 110 120
180 190 200 210 220
pF1KB7 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
NP_001 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB7 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
NP_001 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
190 200 210 220 230 240
290 300 310 320 330 340
pF1KB7 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::..:.::.:
NP_001 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
250 260 270 280 290 300
pF1KB7 TRQ
NP_001 DSN
310
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:56:04 2016 done: Sat Nov 5 01:56:06 2016
Total Scan time: 9.360 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]